Revisions of bowtie2

buildservice-autocommit accepted request 1151250 from Pierre Bonamy's avatar Pierre Bonamy (flyos) (revision 26)
baserev update by copy to link target
Pierre Bonamy's avatar Pierre Bonamy (flyos) accepted request 1150179 from Atri Bhattacharya's avatar Atri Bhattacharya (badshah400) (revision 25)
Update to version 2.5.3.
buildservice-autocommit accepted request 1119256 from Pierre Bonamy's avatar Pierre Bonamy (flyos) (revision 24)
baserev update by copy to link target
Pierre Bonamy's avatar Pierre Bonamy (flyos) accepted request 1118941 from Atri Bhattacharya's avatar Atri Bhattacharya (badshah400) (revision 23)
* Update to version 2.5.2.
* Update simde to version 0.7.6.
* Allow building with LTO, do not set _lto_cflags to %{nil}.
buildservice-autocommit accepted request 1059433 from Pierre Bonamy's avatar Pierre Bonamy (flyos) (revision 22)
baserev update by copy to link target
Pierre Bonamy's avatar Pierre Bonamy (flyos) accepted request 1059201 from Atri Bhattacharya's avatar Atri Bhattacharya (badshah400) (revision 21)
Update to version 2.5.1
buildservice-autocommit accepted request 1037027 from Pierre Bonamy's avatar Pierre Bonamy (flyos) (revision 20)
baserev update by copy to link target
Pierre Bonamy's avatar Pierre Bonamy (flyos) accepted request 1036958 from Atri Bhattacharya's avatar Atri Bhattacharya (badshah400) (revision 19)
- Update to version 2.5.0:
  * Overall improvements in the use of prefetch instructions.
  * Made input/output fully asynchronous by using a dedicated
    thread.
  * Added support for AVX2 256-bit instructions with can be
    enabled by setting the SSE_AXV2 environment variable at
    compile time.
  * Fixed an issue causing bowtie2 to crash when processing ZSTD
    files with high compression ratios.
  * Changed the way that unique alignments are counted in summary
    message to better match up with filters on SAM output.
Pierre Bonamy's avatar Pierre Bonamy (flyos) accepted request 947770 from Atri Bhattacharya's avatar Atri Bhattacharya (badshah400) (revision 18)
- Update to version 2.4.5.
- Update simde to version 0.7.2.
Pierre Bonamy's avatar Pierre Bonamy (flyos) accepted request 903791 from Atri Bhattacharya's avatar Atri Bhattacharya (badshah400) (revision 17)
- Update to version 2.4.4.
- Update simde to version 0.7.0.
- Drop BuildRequires tbb-devel: no longer required.
- RelWithDebInfo isn't supported and assumes fully unoptimised Debug mode; use Release mode instead by passing `-DCMAKE_RELEASE_TYPE=Release` to cmake.
buildservice-autocommit accepted request 843449 from Pierre Bonamy's avatar Pierre Bonamy (flyos) (revision 16)
baserev update by copy to link target
Pierre Bonamy's avatar Pierre Bonamy (flyos) accepted request 843290 from Atri Bhattacharya's avatar Atri Bhattacharya (badshah400) (revision 15)
(Sorry for the goof-up in my previous sr!)
* Actually update bowtie2 source to version 2.4.2 (fixing previous revision).
* Drop patches incorporated upstream:
  * bowtie2-processor_support.patch (commit ebb07cf).
  * bowtie2-cmake-install-targets.patch (commit c9d92ce).
* Package README.md file as doc.
buildservice-autocommit accepted request 842506 from Pierre Bonamy's avatar Pierre Bonamy (flyos) (revision 14)
baserev update by copy to link target
Pierre Bonamy's avatar Pierre Bonamy (flyos) accepted request 842103 from Atri Bhattacharya's avatar Atri Bhattacharya (badshah400) (revision 13)
- Update to version 2.4.2.
- Drop _service file and use tagged version of simde instead (at version 0.6.0); correspondingly drop the obsinfo and obscpio files as well.
buildservice-autocommit accepted request 814674 from Pierre Bonamy's avatar Pierre Bonamy (flyos) (revision 12)
baserev update by copy to link target
Pierre Bonamy's avatar Pierre Bonamy (flyos) accepted request 814673 from Pierre Bonamy's avatar Pierre Bonamy (flyos) (revision 11)
- Added bowtie2-processor_support.patch to fix GCC10 build fail
- Added %fdupes in the spec files to handle duplicated binary files
buildservice-autocommit accepted request 809909 from Pierre Bonamy's avatar Pierre Bonamy (flyos) (revision 10)
baserev update by copy to link target
Pierre Bonamy's avatar Pierre Bonamy (flyos) accepted request 809852 from Atri Bhattacharya's avatar Atri Bhattacharya (badshah400) (revision 9)
- Update to version 2.4.1:
- Add bowtie2-cmake-install-targets.patch to fix cmake scripts, specfically adding install targets and fixing tests (still does not work) [gh#BenLangmead/bowtie2#292].
- Use cmake for building (BuildRequires: cmake); adapt appropriately for aarch64.
- Use pkgconfig based BuildRequires for zlib.
buildservice-autocommit accepted request 805305 from Pierre Bonamy's avatar Pierre Bonamy (flyos) (revision 8)
baserev update by copy to link target
Pierre Bonamy's avatar Pierre Bonamy (flyos) accepted request 803240 from Guillaume GARDET's avatar Guillaume GARDET (Guillaume_G) (revision 7)
- Fix aarch64 build with:
  * simde sources
  * export POPCNT_CAPABILITY=0
Displaying revisions 1 - 20 of 26
openSUSE Build Service is sponsored by