C library for high-throughput sequencing data formats
HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools.
HTSlib implements a generalized BAM index, with file extension .csi (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.
This project also includes the popular tabix indexer, which indexes both .tbi and .csi formats, and the bgzip compression utility.
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Source Files
Filename | Size | Changed |
---|---|---|
baselibs.conf | 0000000098 98 Bytes | |
htslib-1.19.tar.bz2 | 0004774326 4.55 MB | |
libhts.changes | 0000026838 26.2 KB | |
libhts.spec | 0000006161 6.02 KB |
Revision 17 (latest revision is 18)
Pierre Bonamy (flyos)
accepted
request 1136374
from
Stefan Brüns (StefanBruens)
(revision 17)
- Update to version 1.19 Too many changes to list, for details see https://github.com/samtools/htslib/releases/tag/1.19 - Update to version 1.18 Too many changes to list, for details see https://github.com/samtools/htslib/releases/tag/1.18 - Update to version 1.17 Too many changes to list, for details see https://github.com/samtools/htslib/releases/tag/1.17
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