C library for high-throughput sequencing data formats
HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools.
HTSlib implements a generalized BAM index, with file extension .csi (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.
This project also includes the popular tabix indexer, which indexes both .tbi and .csi formats, and the bgzip compression utility.
- Devel package for openSUSE:Factory
- Links to openSUSE:Factory / libhts
- Download package
-
Checkout Package
osc -A https://api.opensuse.org checkout science/libhts && cd $_
- Create Badge
Refresh
Refresh
Source Files
Filename | Size | Changed |
---|---|---|
baselibs.conf | 0000000100 100 Bytes | |
htslib-1.3.1.tar.bz2 | 0000983165 960 KB | |
libhts1.changes | 0000000720 720 Bytes | |
libhts1.spec | 0000002520 2.46 KB |
Revision 1 (latest revision is 18)
Matthias Mailänder (Mailaender)
accepted
request 393855
from
Pierre Bonamy (flyos)
(revision 1)
Removed _service
Comments 0