BLAST+ executables

Edit Package ncbi-blast+
https://www.ncbi.nlm.nih.gov/books/NBK1762/

BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit. The BLAST+ applications have a number of performance and feature improvements over the legacy BLAST applications. For details, please see the BLAST+ user manual and the article in BMC Bioinformatics.
http://www.ncbi.nlm.nih.gov/pubmed/20003500?dopt=Citation

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Source Files
Filename Size Changed
ncbi-blast-2.13.0+-src.tar.gz 0059995353 57.2 MB
ncbi-blast-no-return-from-non-void.patch 0000000542 542 Bytes
ncbi-blast.changes 0000009404 9.18 KB
ncbi-blast.spec 0000006497 6.34 KB
Latest Revision
Stefan Brüns's avatar Stefan Brüns (StefanBruens) accepted request 1006424 from Stefan Brüns's avatar Stefan Brüns (StefanBruens) (revision 9)
- Update to version 2.13.0
  * New features
    - Blastn_vdb and tblastn_vdb included in the 2.13.0 release.
    - Makeblastdb now produces a (JSON) metadata file about the
      database.
  * Improvements
    - TBLASTN can now handle database sequences up to 2 billion
      bases (was 1 billion)
    - Makeblastdb default volume size is now 3 billion bases
     (was 1 billion)
    - Dustmasker has a new option to replace low complexity
      regions with N's (hard masking)
    - Makeblastdb will issue an error message and exit if it
      encounters a sequence longer than the maximum supported
      size (2,147,483,647 letters).
  * Bug fixes
    - Rare problem with mutex that caused BLAST to crash.
    - Memory leaks.
- Update to version 2.12.0
  * New features
    - Threading by query batch (for BLASTN, BLASTP, BLASTX, RPSBLAST,
      and RPSTBLASTN) may more efficiently BLAST large numbers of
      queries, especially if the database is small or the search is
      limited by taxid. Use "-mt_mode 1" to enable this option.
    - Makeblastdb requires less virtual memory for smaller databases.
    - Makeprofiledb creates multiple volumes for a CDD database,
      which allows RPSBLAST to handle a larger number of records.
      The number of SMP files included in a volume can be controlled
      with the new -new_smp_vol option.
    - update_blastdb.pl now supports the "-showall pretty" option
      for databases hosted at the NCBI.
    - update_blastdb.pl now reports the database timestamp in
      ISO8601 format.
  * Bug fixes
    - Fixed phiblast core dump when -subject option is used.
- Use Python 3, wxWidgets 3.2 for building
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