BLAST+ executables
https://www.ncbi.nlm.nih.gov/books/NBK1762/
BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit. The BLAST+ applications have a number of performance and feature improvements over the legacy BLAST applications. For details, please see the BLAST+ user manual and the article in BMC Bioinformatics.
http://www.ncbi.nlm.nih.gov/pubmed/20003500?dopt=Citation
- Sources inherited from project science
- Download package
-
Checkout Package
osc -A https://api.opensuse.org checkout home:redwil:15.4/ncbi-blast+ && cd $_
- Create Badge
Refresh
Refresh
Source Files
Filename | Size | Changed |
---|---|---|
ncbi-blast-2.13.0+-src.tar.gz | 0059995353 57.2 MB | |
ncbi-blast-no-return-from-non-void.patch | 0000000542 542 Bytes | |
ncbi-blast.changes | 0000009404 9.18 KB | |
ncbi-blast.spec | 0000006497 6.34 KB |
Latest Revision
Stefan Brüns (StefanBruens)
accepted
request 1006424
from
Stefan Brüns (StefanBruens)
(revision 9)
- Update to version 2.13.0 * New features - Blastn_vdb and tblastn_vdb included in the 2.13.0 release. - Makeblastdb now produces a (JSON) metadata file about the database. * Improvements - TBLASTN can now handle database sequences up to 2 billion bases (was 1 billion) - Makeblastdb default volume size is now 3 billion bases (was 1 billion) - Dustmasker has a new option to replace low complexity regions with N's (hard masking) - Makeblastdb will issue an error message and exit if it encounters a sequence longer than the maximum supported size (2,147,483,647 letters). * Bug fixes - Rare problem with mutex that caused BLAST to crash. - Memory leaks. - Update to version 2.12.0 * New features - Threading by query batch (for BLASTN, BLASTP, BLASTX, RPSBLAST, and RPSTBLASTN) may more efficiently BLAST large numbers of queries, especially if the database is small or the search is limited by taxid. Use "-mt_mode 1" to enable this option. - Makeblastdb requires less virtual memory for smaller databases. - Makeprofiledb creates multiple volumes for a CDD database, which allows RPSBLAST to handle a larger number of records. The number of SMP files included in a volume can be controlled with the new -new_smp_vol option. - update_blastdb.pl now supports the "-showall pretty" option for databases hosted at the NCBI. - update_blastdb.pl now reports the database timestamp in ISO8601 format. * Bug fixes - Fixed phiblast core dump when -subject option is used. - Use Python 3, wxWidgets 3.2 for building
Comments 0