Wordom is a (simple) command line utility conceived to spare the user
some time in manipulating and converting dcd, xtc, pdb, crd and xyz
files. Wordom is also a versatile program for a broad range of types
of analysis of molecular dynamics trajectories. Original tools in
Wordom include a module for the calculation of order parameters to
monitor polypeptide aggregation and a procedure to evaluate
significance of sampling for principal component analysis. As a plus,
it's easy to use in shell scripts. Due to its simplicity, it is very
easy and straightforward to add your own analysis module. Basically,
all you have to do is write the algorithm. The data are made available
by the existing wordom i/o modules.

Authors:
M. Seeber, M. Cecchini, F. Rao, G. Settanni and A. Caflisch;
Wordom: a program for efficient analysis of molecular dynamics
simulations;
Bioinformatics, 2007, 23(19):2625-2627