baserev update by copy to link target

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- Update to version 1.19
  Too many changes to list, for details see
  https://github.com/samtools/bcftools/releases/tag/1.19
- Update to version 1.18
  Too many changes to list, for details see
  https://github.com/samtools/bcftools/releases/tag/1.18
- Update to version 1.17
  Too many changes to list, for details see
  https://github.com/samtools/bcftools/releases/tag/1.17

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baserev update by copy to link target

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- Update to release 1.16

libhts>=%{minor} is >=16, and is actually incorrect,
since libhts is on 1.15.1/1.16 as well, just like bcftools.

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baserev update by copy to link target

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- Update to version 1.15.1

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baserev update by copy to link target

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- Fixed a bug in python scripts handling making them require "python33"

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- Update to version 1.12

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initialized devel package after accepting 779042

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- Add use_python3.patch to switch from python2 to python3

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- Update to 1.10.2
  * This release fixes crashes reported on files including integer
    INFO tags with values outside the range officially supported
    by VCF. It also fixes a bug where invalid BCF files would be
    created if such values were present.
- Update to 1.10.0
  + Numerous bug fixes, usability improvements and sanity checks were added to prevent common user errors.
  + The -r, --regions (and -R, --regions-file) option should never create unsorted VCFs or duplicates records again. This also fixes rare cases where a spanning deletion makes a subsequent record invisible to bcftools isec and other commands.
  + Additions to filtering and formatting expressions
    * support for the spanning deletion alternate allele (ALT=*)
    * new ILEN filtering expression to be able to filter by indel length
    * new MEAN, MEDIAN, MODE, STDEV, phred filtering functions
    * new formatting expression %PBINOM (phred-scaled binomial probability), %INFO (the whole INFO column), %FORMAT (the whole FORMAT column), %END (end position of the REF allele), %END0 (0-based end position of the REF allele), %MASK (with multiple files indicates the presence of the site in other files)
  + New plugins
    * +gvcfz: compress gVCF file by resizing gVCF blocks according to specified criteria
    * +indel-stats: collect various indel-specific statistics
    * +parental-origin: determine parental origin of a CNV region
    * +remove-overlaps: remove overlapping variants.
    * +split-vep: query structured annotations such INFO/CSQ created by bcftools/csq or VEP
    * +trio-dnm: screen variants for possible de-novo mutations in trios
  + annotate
    * new -l, --merge-logic option for combining multiple overlapping regions
  + call
    * new bcftools call -G, --group-samples option which allows grouping samples into populations and applying the HWE assumption within but not across the groups.
  + csq
    * significant reduction of memory usage in the local -l mode for VCFs with thousands of samples and 20% reduction in the non-local haplotype-aware mode.
    * fixes a small memory leak and formatting issue in FORMAT/BCSQ at sites with many consequences
    * do not print protein sequence of start_lost events
    * support for "start_retained" consequence
    * support for symbolic insertions (ALT="<INS...>"), "feature_elongation" consequence
    * new -b, --brief-predictions option to output abbreviated protein predictions.
  + concat
    * the --naive command now checks header compatibility when concatenating multiple files.
  + consensus
    * add a new -H, --haplotype 1pIu/2pIu feature to output first/second allele for phased genotypes and the IUPAC code for unphased genotypes
    * new -p, --prefix option to add a prefix to sequence names on output
  + +contrast
    * added support for Fisher's test probability and other annotations
  + +fill-from-fasta
    * new -N, --replace-non-ACGTN option
  + +dosage
    * fix some serious bugs in dosage calculation
  + +fill-tags
    * extended to perform simple on-the-fly calculations such as calculating INFO/DP from FORMAT/DP.
  + merge
    * add support for merging FORMAT strings
    * bug fixed in gVCF merging
  + mpileup
    * a new optional SCR annotation for the number of soft-clipped reads
  + reheader
    * new -f, --fai option for updating contig lines in the VCF header
  + +trio-stats
    * extend output to include DNM homs and recurrent DNMs
  + VariantKey support

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- Update to 1.9
    * `annotate`
        - REF and ALT columns can be now transferred from the annotation 
    file.
        - fixed bug when setting vector_end values.
    * `consensus`
        - new -M option to control output at missing genotypes
        - variants immediately following insersions should not be skipped. 
          Note however, that the current fix requires normalized VCF and may 
          still falsely skip variants adjacent to multiallelic indels.
        - bug fixed in -H selection handling
    * `convert`
        - the --tsv2vcf option now makes the missing genotypes diploid, 
          "./." instead of "."
        - the behavior of -i/-e with --gvcf2vcf changed. Previously only 
          sites with FILTER set to "PASS" or "." were expanded and the -i/-e 
          options dropped sites completely. The new behavior is to let the -i/-e 
          options control which records will be expanded. In order to drop 
          records completely, one can stream through "bcftools view" first.
    * `csq`
        - since the real consequence of start/splice events are not known, 
          the aminoacid positions at subsequent variants should stay unchanged
        - add `--force` option to skip malformatted transcripts in GFFs 
          with out-of-phase CDS exons.
    * `+dosage`: output all alleles and all their dosages at multiallelic 
       sites
    * `+fixref`: fix serious bug in -m top conversion
    * `-i/-e` filtering expressions:
        - add two-tailed binomial test
        - add functions N_PASS() and F_PASS()
        - add support for lists of samples in filtering expressions, with 
          many samples it was impractical to list them all on the command line. 
          Samples can be now in a file as, e.g., GT[@samples.txt]="het"
        - allow multiple perl functions in the expressions and some bug 
          fixes
        - fix a parsing problem, '@' was not removed from '@filename' 
          expressions
    * `mpileup`: fixed bug where, if samples were renamed using the `-G` 
       (`--read-groups`) option, some samples could be omitted from the 
       output file.
    * `norm`: update INFO/END when normalizing indels
    * `+split`: new -S option to subset samples and to use custom file 
       names instead of the defaults
    * `+smpl-stats`: new plugin
    * `+trio-stats`: new plugin
    * Fixed build problems with non-functional configure script produced 
      on some platforms

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- Update to 1.8
- Cleaned spec file using spec-cleaner

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ChangeLog added. Sorry about that.

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