Revisions of python-hyperspy
Dirk Mueller (dirkmueller)
accepted
request 1060037
from
Benjamin Greiner (bnavigator)
(revision 3)
- Update to 1.7.3 ## Bug Fixes * Fix error when reading Velox containing FFT with odd number of pixels (#3040) * Fix pint Unit for pint>=0.20 (#3052) ## Maintenance * Fix deprecated import of scipy ascent in docstrings and the test suite (#3032) * Fix error handling when trying to convert a ragged signal to non-ragged for numpy >=1.24 (#3033) * Fix getting random state dask for dask>=2022.10.0 (#3049) - Release Hyperspy 1.7.2 ## Bug Fixes * Fix some errors and remove unnecessary code identified by LGTM. (#2977) * Fix error which occurs when guessing output size in the map() function and using dask newer than 2022.7.1 (#2981) * Fix display of x-ray lines when using log norm and the intensity at the line is 0 (#2995) * Fix handling constant derivative in spikes_removal_tool() (#3005) * Fix removing horizontal or vertical line widget; regression introduced in hyperspy 1.7.0 (#3008) ## Maintenance * Fix extension test suite CI workflow. Enable workflow manual trigger (#2982) * Fix deprecation warning and time zone test failing on windows (locale dependent) (#2984) * Fix external links in the documentation and add CI build to check external links (#3001)
Markéta Machová (mcalabkova)
accepted
request 885370
from
andy great (andythe_great)
(revision 2)
- Update to version 1.6.2. * Widgets plotting improvement and add ``pick_tolerance`` to plot preferences * Update external links in the loading data section of the user guide * Pass keyword argument to the image IO plugins * Drop support for numpy<1.16, in line with NEP 29 and fix protochip reader for numpy 1.20 * Run test suite against upstream dependencies (numpy, scipy, scikit-learn and scikit-image) * Improve error message when file not found * Add update instructions to user guide * Fix disconnect event when closing navigator only plot * Improve plotting navigator of lazy signals, add ``navigator`` setter to lazy signals * Use 'dask_auto' when rechunk=True in ``change_dtype`` for lazy signal * Use dask chunking when saving lazy signal instead of rechunking and leave the user to decide what is the suitable chunking * Fix incorrect chunksize when saving EMD NCEM file and specifying chunks * Fix ``find_peaks`` GUIs call with laplacian/difference of gaussian methods * Added lazy reading support for FFT and DPC datasets in FEI emd datasets * Fix various future and deprecation warnings from numpy and scikit-learn * Improve error message when initialising SpanROI with left >= right * Fix ``iterpath`` VisibleDeprecationWarning when using ``fit_component`` * Fix various bugs with ``CircleWidget`` and ``Line2DWidget`` * Allow running the test suite without the pytest-mpl plugin * Fix warnings when building documentation * Add Releasing guide * Fix setting signal range of model with negative axis scales * Fix and improve mask handling in lazy decomposition * Plot scalebar when the axis scales have different sign * Fix align1D returning zeros shifts * Fix finding dataset path for EMD NCEM file containing more than one dataset in a group * Add support for python 3.9, fix deprecation warning with matplotlib 3.4.0 and bump minimum requirement to numpy 1.17.1 and dask 2.1.0. * Add integration test suite documentation in the developer guide. * Fix squeeze function for multiple zero-dimensional entries, improved docstring, added to user guide. * Use native endianess in numba jitted functions. * Fix error in Cliff-Lorimer quantification using absorption correction * Fix ``navigation_mask`` bug in decomposition when provided as numpy array * Fix closing image contrast tool and setting vmin/vmax values * Fix range widget with matplotlib 3.4 * Fix bug in `hs.interactive` with function returning `None`. Improve user guide example. * Add option not to snap ROI when calling the `interactive` method of a ROI * Fix broken events when changing signal type * Make DictionaryTreeBrowser lazy by default * Fix setting offset in rebin: the offset was changed in the wrong axis * Fix reading XRF bruker file * Speed up setting CI on azure pipeline * Fix performance issue with the lazy map method of lazy * Add option to copy/load original metadata in ``hs.stack`` and ``hs.load`` to avoid large ``original_metadata`` which can slowdown processing. * Fix SkewNormal component compatibility with sympy 1.8
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