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File samtools.spec of Package samtools
# # spec file for package samtools # # Copyright (c) 2024 SUSE LLC # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # Please submit bugfixes or comments via https://bugs.opensuse.org/ # %define htsminversion 1.19 Name: samtools Version: 1.19 Release: 0 Summary: Tools for manipulating next-generation sequencing data License: MIT Group: Productivity/Scientific/Other URL: https://github.com/samtools/samtools Source: https://github.com/samtools/samtools/releases/download/%{version}/samtools-%{version}.tar.bz2 BuildRequires: ncurses-utils BuildRequires: perl BuildRequires: pkgconfig(htslib) >= %{htsminversion} BuildRequires: pkgconfig(ncurses) BuildRequires: pkgconfig(zlib) Requires: bgzip Requires: libhts3 >= %{htsminversion} Requires: perl Requires: tabix %description Samtools implements various utilities for post-processing alignments in the SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction with bcftools), and a simple alignment viewer. %prep %setup -q %build %configure --with-htslib=system %make_build %install %make_install # CONVERT env HASHBANGS TO USE DIRECT EXECUTABLE perlbin=`which perl` sed -i "s:/usr/bin/env perl:${perlbin}:" %{buildroot}/%{_bindir}/*.pl sed -i "s:/usr/bin/env perl:${perlbin}:" %{buildroot}/%{_bindir}/plot-bamstats sed -i "s:/usr/bin/env perl:${perlbin}:" %{buildroot}/%{_bindir}/plot-ampliconstats %files %license LICENSE %doc NEWS.md README %{_bindir}/* %{_mandir}/man1/* %changelog
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