File python-tifffile.spec of Package python-tifffile

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File python-tifffile.spec of Package python-tifffile

#
# spec file for package python-tifffile
#
# Copyright (c) 2024 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# Please submit bugfixes or comments via https://bugs.opensuse.org/
#

%global flavor @BUILD_FLAVOR@%{nil}
%if "%{flavor}" == "test"
%define psuffix -test
%bcond_without test
%else
%define psuffix %{nil}
%bcond_with test
%endif
Name:           python-tifffile%{psuffix}
Version:        2024.2.12
Release:        0
Summary:        Read and write TIFF files
License:        BSD-2-Clause
URL:            https://github.com/cgohlke/tifffile/
Source:         https://github.com/cgohlke/tifffile/archive/v%{version}.tar.gz#/tifffile-%{version}.tar.gz
BuildRequires:  %{python_module base >= 3.9}
BuildRequires:  %{python_module numpy >= 1.21}
BuildRequires:  %{python_module pip}
BuildRequires:  %{python_module setuptools}
BuildRequires:  %{python_module wheel}
BuildRequires:  fdupes
BuildRequires:  python-rpm-macros
Requires:       python-numpy
Requires(post): update-alternatives
Requires(postun): update-alternatives
Recommends:     python-fsspec
Recommends:     python-imagecodecs >= 2023.3.16
Recommends:     python-lxml
Recommends:     python-matplotlib >= 3.3
Recommends:     python-zarr
# SECTION test
%if %{with test}
BuildRequires:  %{python_module cmapfile}
BuildRequires:  %{python_module czifile}
BuildRequires:  %{python_module dask}
BuildRequires:  %{python_module defusedxml}
BuildRequires:  %{python_module fsspec}
BuildRequires:  %{python_module imagecodecs >= 2023.3.16}
BuildRequires:  %{python_module lfdfiles}
BuildRequires:  %{python_module lxml}
BuildRequires:  %{python_module matplotlib}
BuildRequires:  %{python_module ndtiff}
BuildRequires:  %{python_module oiffile}
BuildRequires:  %{python_module pytest-xdist}
BuildRequires:  %{python_module pytest}
BuildRequires:  %{python_module roifile}
BuildRequires:  %{python_module xarray if %python-base >= 3.10}
BuildRequires:  %{python_module zarr}
%endif
# /SECTION
BuildArch:      noarch
%python_subpackages

%description
Read and write TIFF files. Read image and metadata from many
bio-scientific formats such as plain TIFF, BigTIFF, OME-TIFF, STK, LSM,
SGI, NIH, ImageJ, MicroManager, MD GEL, and FluoView files. Write numpy
arrays to TIFF, BigTIFF, and ImageJ hyperstack compatible files.

%prep
%setup -q -n tifffile-%{version}
# Fix warning wrong-file-end-of-line-encoding
sed -i 's/\r//' README.rst
sed -i '1{/env python/d}' tifffile/{lsm2bin,tiff2fsspec,tiffcomment}.py

%build
%pyproject_wheel

%install
%if !%{with test}
%pyproject_install
%python_clone -a %{buildroot}%{_bindir}/tifffile
%python_clone -a %{buildroot}%{_bindir}/lsm2bin
%python_clone -a %{buildroot}%{_bindir}/tiffcomment
%python_clone -a %{buildroot}%{_bindir}/tiff2fsspec

%python_expand %fdupes %{buildroot}%{$python_sitelib}
%prepare_alternative tifffile
%prepare_alternative lsm2bin
%prepare_alternative tiffcomment
%endif

%post
%python_install_alternative tifffile
%python_install_alternative lsm2bin
%python_install_alternative tiffcomment
%python_install_alternative tiff2fsspec

%postun
%python_uninstall_alternative tifffile
%python_uninstall_alternative lsm2bin
%python_uninstall_alternative tiffcomment
%python_uninstall_alternative tiff2fsspec

%check
%if %{with test}
# Crashes Out-Of-Memory
donttest="test_write_5GB_bigtiff or test_write_imagej_raw"
# no lerc support in imagecodecs
donttest="$donttest or test_write_compression_lerc"
# flaky write errors
donttest="$donttest or test_write_extrasamples_planar"
donttest="$donttest or test_write_extrasamples_contig_rgb"
donttest="$donttest or test_write_compression_args"
donttest="$donttest or test_issue_invalid_predictor"
%pytest -n auto -k "not ($donttest)"
%endif

%if !%{with test}
%files %{python_files}
%doc README.rst
%license LICENSE
%python_alternative %{_bindir}/tifffile
%python_alternative %{_bindir}/lsm2bin
%python_alternative %{_bindir}/tiffcomment
%python_alternative %{_bindir}/tiff2fsspec
%{python_sitelib}/tifffile-%{version}.dist-info/
%{python_sitelib}/tifffile
%endif

%changelog

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