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-------------------------------------------------------------------
Sun Feb 18 15:10:59 UTC 2024 - Ben Greiner <code@bnavigator.de>

- Update to 1.11.0
  ## New Features
  ### photutils.psf
  * An init_params table is now included in the PSFPhotometry
    fit_results dictionary. [#1681]
  * Added an include_localbkg keyword to the PSF photometry
    make_model_image and make_residual_image methods. [#1691]
  * Significantly reduced the memory usage of PSF photometry when
    using a GriddedPSFModel PSF model. [#1679]
  * Added a mode keyword to IterativePSFPhotometry for controlling
    the fitting mode. [#1708]
  ### photutils.datasets
  * Improved the performance of make_test_psf_data when generating
    random coordinates with a minimum separation. [#1668]
  ### photutils.segmentation
  * The SourceFinder npixels keyword can now be a tuple
    corresponding to the values used for the source finder and
    source deblender, respectively. [#1688]
  ### photutils.utils
  * Improved the performance of ImageDepth when generating random
    coordinates with a minimum separation. [#1668]
  ## Bug Fixes
  ### photutils.psf
  * Fixed an issue where PSF models produced by make_psf_model
    would raise an error with PSFPhotometry if the fit did not
    converge. [#1672]
  * Fixed an issue where GriddedPSFModel fixed model parameters
    were not respected when copying the model or fitting with the
    PSF photometry classes. [#1679]
  ## API Changes
  ### photutils.aperture
  * PixelAperture instances now raise an informative error message
    when positions is input as a zip object containing Astropy
    Quantity objects. [#1682]
  ### photutils.psf
  * The GridddedPSFModel string representations now include the
    model flux, x_0, and y_0 parameters. [#1680]
  * The PSF photometry make_model_image and make_residual_image
    methods no longer include the local background by default. This
    is a backwards-incompatible change. If the previous behavior is
    desired, set include_localbkg=True. [#1703]
  * The PSF photometry finder_results attribute is now returned as
    a QTable instead of a list of QTable. [#1704]
  * Deprecated the NonNormalizable custom warning class in favor of
    AstropyUserWarning. [#1710]
  ### photutils.segmentation
  * The SourceCatalog get_label and get_labels methods now raise a
    ValueError if any of the input labels are invalid. [#1694]

-------------------------------------------------------------------
Fri Nov 24 12:38:58 UTC 2023 - Ben Greiner <code@bnavigator.de>

- Update to 1.10.0
  ## General
  * The minimum required Astropy is now 5.1. [#1627]
  ## New Features
  ### photutils.datasets
  * Added a border_size keyword to make_test_psf_data. [#1665]
  * Improved the generation of random PSF positions in
    make_test_psf_data. [#1665]
  ### photutils.detection
  * Added a min_separation keyword to DAOStarFinder and
    IRAFStarFinder. [#1663]
  ### photutils.morphology
  * Added a wcs keyword to data_properties. [#1648]
  ### photutils.psf
  * The GriddedPSFModel plot_grid method now returns a
    matplotlib.figure.Figure object. [#1653]
  * Added the ability for the GriddedPSFModel read method to read
    FITS files generated by WebbPSF. [#1654]
  * Added “flux_0” and “flux0” as allowed flux column names in the
    init_params table input to the PSF photometry objects. [#1656]
  * PSF models output from prepare_psf_model can now be input into
    the PSF photometry classes. [#1657]
  * Added make_psf_model function for making a PSF model from a 2D
    Astropy model. Compound models are also supported. [#1658]
  * The GriddedPSFModel oversampling can now be different in the x
    and y directions. The oversampling attribute is now stored as a
    1D numpy.ndarray with two elements. [#1664]
  ### photutils.segmentation
  * The SegmentationImage make_source_mask method now uses a much
    faster implementation of binary dilation. [#1638]
  * Added a scale keyword to the SegmentationImage.to_patches()
    method to scale the sizes of the polygon patches. [#1641,
    #1646]
  * Improved the SegmentationImage imshow method to ensure that
    labels are plotted with unique colors. [#1649]
  * Added a imshow_map method to SegmentationImage for plotting
    segmentation images with a small number of non-consecutive
    labels. [#1649]
  * Added a reset_cmap method to SegmentationImage for resetting
    the colormap to a new random colormap. [#1649]
  ### photutils.utils
  * Improved the generation of random aperture positions in
    ImageDepth. [#1666]
  ## Bug Fixes
  ### photutils.aperture
  * Fixed an issue where the aperture plot method **kwargs were not
    reset to the default values when called multiple times. [#1655]
  ### photutils.psf
  * Fixed a bug where SourceGrouper would fail if only one source
    was input. [#1617]
  * Fixed a bug in GriddedPSFModel plot_grid where the grid could
    be plotted incorrectly if the input xygrid was not sorted in y
    then x order. [#1661]
  ### photutils.segmentation
  * Fixed an issue where deblend_sources and SourceFinder would
    raise an error if the contrast keyword was set to 1 (meaning no
    deblending). [#1636]
  * Fixed an issue where the vertices of the SegmentationImage
    polygons were shifted by 0.5 pixels in both x and y. [#1646]
  * API Changes
  * The metadata in output tables now contains a timestamp. [#1640]
  * Package versions in table metadata are now stored in the
    “versions” key. [#1640]
  * The order of the metadata in a table is now preserved when
    writing to a file. [#1640]
  ### photutils.psf
  * Deprecated the prepare_psf_model function. Use the new
    make_psf_model function instead. [#1658]
  * The GriddedPSFModel now stores the ePSF grid such that it is
    first sorted by y then by x. As a result, the order of the data
    and xygrid attributes may be different. [#1661]
  * The oversampling attribute is now stored as a 1D numpy.ndarray
    with two elements. [#1664]
  * A ValueError is raised if GriddedPSFModel is called with x and
    y arrays that have more than 2 dimensions. [#1662]
  ### photutils.segmentation
  * Removed the deprecated kernel keyword from SourceCatalog.
    [#1613]

-------------------------------------------------------------------
Fri Aug 25 14:57:13 UTC 2023 - Ben Greiner <code@bnavigator.de>

- Update to 1.9.0
  ## General
  * The minimum required Python is now 3.9. [#1569]
  * The minimum required NumPy is now 1.22. [#1572]
  ## New Features
  ### photutils.background
  * Added LocalBackground class for computing local backgrounds in
    a circular annulus aperture. [#1556]
  ### photutils.datasets
  * Added new make_test_psf_data function. [#1558, #1582, #1585]
  ### photutils.psf
  * Propagate measurement uncertainties in PSF fitting. [#1543]
  * Added new PSFPhotometry and IterativePSFPhotometry classes for
    performing PSF-fitting photometry. [#1558, #1559, #1563, #1566,
    #1567, #1581, #1586, #1590, #1594, #1603, #1604]
  * Added a new SourceGrouper class. [#1558, #1605]
  * Added a GriddedPSFModel fill_value attribute. [#1583]
  * Added a grid_from_epsfs function to make a GriddedPSFModel from
    ePSFs. [#1596]
  * Added a read method to GriddedPSFModel for reading “STDPSF”
    FITS files containing grids of ePSF models. [#1557]
  * Added a plot_grid method to GriddedPSFModel for plotting ePSF
    grids. [#1557]
  * Added a STDPSFGrid class for reading “STDPSF” FITS files
    containing grids of ePSF models and plotting the ePSF grids.
    [#1557]
  ## Bug Fixes
  ### photutils.aperture
  * Fixed a bug in the validation of PixelAperture positions.
    [#1553]
  ## API Changes
  ### photutils.psf
  * Deprecated the PSF photometry classes BasicPSFPhotometry,
    IterativelySubtractedPSFPhotometry, and DAOPhotPSFPhotometry.
    Use the new PSFPhotometry or IterativePSFPhotometry class
    instead. [#1578]
  * Deprecated the DAOGroup, DBSCANGroup, and GroupStarsBase
    classes. Use the new SourceGrouper class instead. [#1578]
  * Deprecated the get_grouped_psf_model and subtract_psf function.
    [#1578]

-------------------------------------------------------------------
Thu May 18 18:27:21 UTC 2023 - Ben Greiner <code@bnavigator.de>

- Update to 1.8.0
  ## New Features
  ### photutils.profiles
  * The RadialProfile and CurveOfGrowth radial bins can now be
    directly input, which also allows for non-uniform radial
    spacing. [#1540]
  ## Bug Fixes
  ### photutils.psf
  * Fixed an issue with the local model cache in GriddedPSFModel,
    significantly improving performance. [#1536]
  ## API Changes
  * Removed the deprecated axes keyword in favor of ax for
    consistency with other packages. [#1523]
  ## photutils.aperture
  * Removed the ApertureStats unpack_nddata method. [#1537]
  ## photutils.profiles
  * The API for defining the radial bins for the RadialProfile and
    CurveOfGrowth classes was changed. While the new API allows for
    more flexibility, unfortunately, it is not
    backwards-compatible. [#1540]
  ## photutils.segmentation
  * Removed the deprecated kernel keyword from detect_sources and
    deblend_sources. [#1524]
  * Deprecated the kernel keyword in SourceCatalog. [#1525]
  * Removed the deprecated outline_segments method from
    SegmentationImage. [#1526]
  * The SourceCatalog kron_params attribute is no longer returned
    as a ndarray. It is returned as a tuple. [#1531]

-------------------------------------------------------------------
Wed Apr 26 10:01:15 UTC 2023 - Ben Greiner <code@bnavigator.de>

- Update to 1.7.0
  ## General
  * The rasterio and shapely packages are now optional
    dependencies. [#1509]
  ## New Features
  ### photutils.aperture
  * Significantly improved the performance of aperture_photometry
    and the PixelAperture do_photometry method for large arrays.
    [#1485]
  * Significantly improved the performance of the PixelAperture
    area_overlap method, especially for large arrays. [#1490]
  ### photutils.profiles
  * Added a new profiles subpackage containing RadialProfile and
    CurveOfGrowth classes. [#1494, #1496, #1498, #1499]
  ### photutils.psf
  * Significantly improved the performance of evaluating and
    fitting GriddedPSFModel instances. [#1503]
  ### photutils.segmentation
  * Added a size keyword to the SegmentationImage make_source_mask
    method. [#1506]
  * Significantly improved the performance of SegmentationImage
    make_source_mask when using square footprints for source
    dilation. [#1506]
  * Added the polygons property and to_patches and plot_patches
    methods to SegmentationImage. [#1509]
  * Added polygon keyword to the Segment class. [#1509]
  ## Bug Fixes
  ### photutils.centroids
  * Fixed an issue where centroid_quadratic would sometimes fail if
    the input data contained NaNs. [#1495]
  ### photutils.detection
  * Fixed an issue with the starfinders (DAOStarFinder,
    IRAFStarFinder, and StarFinder) where an exception was raised
    if exclude_border=True and there were no detections. [#1512].
  ### photutils.isophote
  * Fixed a bug where the upper harmonics (a3, a4, b3, and b4) had
    the incorrect sign. [#1501]
  * Fixed a bug in the calculation of the upper harmonic errors
    (a3_err, a4_err, b3_err, and b4_err). [#1501].
  ### photutils.psf
  * Fixed an issue where the PSF-photometry progress bar was not
    shown. [#1517]
  * Fixed an issue where all PSF uncertainties were excluded if the
    last star group had no covariance matrix. [#1519]
  ### photutils.utils
  * Fixed a bug in the calculation of ImageCutout xyorigin when
    using the 'partial' mode when the cutout extended beyond the
    right or top edge. [#1508]
  ## API Changes
  ### photutils.aperture
  * The ApertureStats local_bkg keyword can now be broadcast for
    apertures with multiple positions. [#1504]
  ### photutils.centroids
  * The centroid_sources function will now raise an error if the
    cutout mask contains all True values. [#1516]
  ### photutils.datasets
  * Removed the deprecated load_fermi_image function. [#1479]
  ### photutils.psf
  * Removed the deprecated sandbox classes DiscretePRF and
    Reproject. [#1479]
  ### photutils.segmentation
  * Removed the deprecated make_source_mask function in favor of
    the SegmentationImage.make_source_mask method. [#1479]
  * The SegmentationImage imshow method now uses "nearest"
    interpolation instead of "none" to avoid rendering issues with
    some backends. [#1507]
  * The repr() notebook output for the Segment class now includes a
    SVG polygon representation of the segment if the rasterio and
    shapely packages are installed. [#1509]
  * Deprecated the SegmentationImage outline_segments method. Use
    the plot_patches method instead. [#1509]
- Drop photutils-pr1484-no-setuptools.patch

-------------------------------------------------------------------
Thu Dec 22 15:05:47 UTC 2022 - Ben Greiner <code@bnavigator.de>

- Update to 1.6.0
  ## General
  * Following NEP 29, the minimum required Numpy is now 1.20.
    [#1442]
  * The minimum required Matplotlib is now 3.3.0. [#1442]
  * The minimum required scikit-image is now 0.18.0. [#1442]
  * The minimum required scikit-learn is now 1.0. [#1442]
  ## New Features
  ### photutils.aperture
  * The ApertureStats class now accepts astropy NDData objects as
    input. [#1409]
  * Improved the performance of aperture photometry by 10-25%
    (depending on the number of aperture positions). [#1438]
  ### photutils.psf
  * Added a progress bar for fitting PSF photometry [#1426]
  * Added a subshape keyword to the PSF-fitting classes to define
    the shape over which the PSF is subtracted. [#1477]
  ### photutils.segmentation
  * Added the ability to slice SegmentationImage objects. [#1413]
  * Added mode and fill_value keywords to SourceCatalog
    make_cutouts method. [#1420]
  * Added segment_area source property and wcs, localbkg_width,
    apermask_method, and kron_params attributes to SourceCatalog.
    [#1425]
  * Added the ability to use Quantity arrays with detect_threshold,
    detect_sources, deblend_sources, and SourceFinder. [#1436]
  * The progress bar used when deblending sources now is prepended
    with “Deblending”. [#1439]
  * Added “windowed” centroids to SourceCatalog. [#1447, #1468]
  * Added quadratic centroids to SourceCatalog. [#1467, #1469]
  * Added a progress_bar option to SourceCatalog for displaying
    progress bars when calculating some source properties. [#1471]
  ### photutils.utils
  * Added xyorigin attribute to CutoutImage. [#1419]
  * Added ImageDepth class. [#1434]
  ## Bug Fixes
  ### photutils.aperture
  * Fixed a bug in the PixelAperture area_overlap method so that
    the returned value does not inherit the data units. [#1408]
  * Fixed an issue in ApertureStats get_ids for the case when the
    ID numbers are not sorted (due to slicing). [#1423]
  ### photutils.datasets
  * Fixed a bug in the various load functions where FITS files were
    not closed. [#1455]
  ### photutils.segmentation
  * Fixed an issue in the SourceCatalog kron_photometry,
    make_kron_apertures, and plot_kron_apertures methods where the
    input minimum Kron and circular radii would not be applied.
    Instead the instance-level minima would always be used. [#1421]
  * Fixed an issue where the SourceCatalog plot_kron_apertures
    method would raise an error for a scalar SourceCatalog. [#1421]
  * Fixed an issue in SourceCatalog get_labels for the case when
    the labels are not sorted (due to slicing). [#1423]
  ## API Changes
  * Deprecated axes keyword in favor of ax for consistency with
    other packages. [#1432]
  * Importing tools from all subpackages now requires including the
    subpackage name.
  ### photutils.aperture
  * Inputting PixelAperture positions as an Astropy Quantity in
    pixel units is no longer allowed. [#1398]
  * Inputting SkyAperture shape parameters as an Astropy Quantity
    in pixel units is no longer allowed. [#1398]
  * Removed the deprecated BoundingBox as_patch method. [#1462]
  ### photutils.centroids
  * Removed the deprecated oversampling keyword in centroid_com.
    [#1398]
  ### photutils.datasets
  * Deprecated the load_fermi_image function. [#1455]
  ### photutils.psf
  * Removed the deprecated flux_residual_sigclip keyword in
    EPSFBuilder. Use sigma_clip instead. [#1398]
  * PSF photometry classes will no longer emit a RuntimeWarning if
    the fitted parameter variance is negative. [#1458]
  ### photutils.segmentation
  * Removed the deprecated sigclip_sigma and sigclip_iters keywords
    in detect_threshold. Use the sigma_clip keyword instead.
    [#1398]
  * Removed the mask_value, sigclip_sigma, and sigclip_iters
    keywords in detect_threshold. Use the mask or sigma_clip
    keywords instead. [#1398]
  * Removed the deprecated the filter_fwhm and filter_size keywords
    in make_source_mask. Use the kernel keyword instead. [#1398]
  * If detection_cat is input to SourceCatalog, then the detection
    catalog source centroids and morphological/shape properties
    will be returned instead of calculating them from the input
    data. Also, if detection_cat is input, then the input wcs,
    apermask_method, and kron_params keywords will be ignored.
    [#1425]
- Add photutils-pr1484-no-setuptools.patch
  gh#astropy/photutils#1484

-------------------------------------------------------------------
Mon Aug  1 17:22:10 UTC 2022 - Ben Greiner <code@bnavigator.de>

- Update to 1.5.0
  General
  * Added tqdm as an optional dependency. [#1364]
  New Features
  * photutils.psf
    - Added a mask keyword when calling the PSF-fitting classes.
      [#1350, #1351]
    - The EPSFBuilder progress bar will use tqdm if the optional
      package is installed. [#1367]
  * photutils.segmentation
    - Added SourceFinder class, which is a convenience class
      combining detect_sources and deblend_sources. [#1344]
    - Added a sigma_clip keyword to detect_threshold. [#1354]
    - Added a make_source_mask method to SegmentationImage. [#1355]
    - Added a make_2dgaussian_kernel convenience function. [#1356]
    - Allow SegmentationImage.make_cmap background_color to be in
      any matplotlib color format. [#1361]
    - Added an imshow convenience method to SegmentationImage.
      [#1362]
    - Improved performance of deblend_sources. [#1364]
    - Added a progress_bar keyword to deblend_sources. [#1364]
    - Added a 'sinh' mode to deblend_sources. [#1368]
    - Improved the resetting of cached SegmentationImage properties
      so that custom (non-cached) attributes can be kept. [#1368]
    - Added a nproc keyword to enable multiprocessing in
      deblend_sources and SourceFinder. [#1372]
    - Added a make_cutouts method to SourceCatalog for making
      custom-shaped cutout images. [#1376]
    - Added the ability to set a minimum unscaled Kron radius in
      SourceCatalog. [#1381]
  * photutils.utils
    - Added a circular_footprint convenience function. [#1355]
    - Added a CutoutImage class. [#1376]
  Bug Fixes
  * photutils.psf
    - Fixed a warning message in EPSFFitter. [#1382]
  * photutils.segmentation
    - Fixed an issue in generating watershed markers used for
      source deblending. [#1383]
  API Changes
  * photutils.centroids
    - Changed the axes order of oversampling keyword in
      centroid_com when input as a tuple. [#1358]
    - Deprecated the oversampling keyword in centroid_com. [#1377]
  * photutils.psf
    - Invalid data values (i.e., NaN or inf) are now automatically
      masked when performing PSF fitting. [#1350]
    - Deprecated the sandbox classes DiscretePRF and Reproject.
      [#1357]
    - Changed the axes order of oversampling keywords when input as
      a tuple. [#1358]
    - Removed the unused shift_val keyword in EPSFBuilder and
      EPSFModel. [#1377]
    - Renamed the flux_residual_sigclip keyword (now deprecated) to
      sigma_clip in EPSFBuilder. [#1378]
    - The EPSFBuilder progress bar now requires that the optional
      tqdm package be installed. [#1379]
    - The tools in the PSF package now require keyword-only
      arguments. [#1386]
  * photutils.segmentation
    - Removed the deprecated circular_aperture method from
      SourceCatalog. [#1329]
    - The SourceCatalog plot_kron_apertures method now sets a
      default kron_apers value. [#1346]
    - deblend_sources no longer allows an array to be input as a
      segmentation image. It must be a SegmentationImage object.
      [#1347]
    - SegmentationImage no longer allows array-like input. It must
      be a numpy ndarray. [#1347]
    - Deprecated the sigclip_sigma and sigclip_iters keywords in
      detect_threshold. Use the sigma_clip keyword instead. [#1354]
    - Deprecated the make_source_mask function in favor of the
      SegmentationImage.make_source_mask method. [#1355]
    - Deprecated the kernel keyword in detect_sources and
      deblend_sources. Instead, if filtering is desired, input a
      convolved image directly into the data parameter. [#1365]
    - Sources with a data minimum of zero are now treated the same
      as negative minima (i.e., the mode is changed to “linear”)
      for the “exponential” deblending mode. [#1368]
    - A single warning (as opposed to 1 per source) is now raised
      about negative/zero minimum data values using the
      ‘exponential’ deblending mode. The affected labels is
      available in a new “info” attribute. [#1368]
    - If the mode in deblend_sources is “exponential” or “sinh” and
      there are too many potential deblended sources within a given
      source (watershed markers), a warning will be raised and the
      mode will be changed to “linear”. [#1369]
    - The SourceCatalog make_circular_apertures and
      make_kron_apertures methods now return a single aperture
      (instead of a list with one item) for a scalar SourceCatalog.
      [#1376]
    - The SourceCatalog kron_params keyword now has an optional
      third item representing the minimum circular radius. [#1381]
    - The SourceCatalog kron_radius is now set to the minimum Kron
      radius (the second element of kron_params) if the data or
      radially weighted data sum to zero. [#1381]
  * photutils.utils
    - The colormap returned from make_random_cmap now has colors in
      RGBA format. [#1361]

-------------------------------------------------------------------
Mon Mar 28 17:36:19 UTC 2022 - Ben Greiner <code@bnavigator.de>

- Update to 1.4.0 
  New Features
  * photutils.aperture
    * Added a copy method to Aperture objects. [#1304]
    * Added the ability to compare Aperture objects for equality.
      [#1304]
    * The theta keyword for EllipticalAperture, EllipticalAnnulus,
      RectangularAperture, and RectangularEllipse can now be an
      Astropy Angle or Quantity in angular units. [#1308]
    * Added an ApertureStats class for computing statistics of
      unmasked pixels within an aperture. [#1309, #1314, #1315,
      #1318]
    * Added a dtype keyword to the ApertureMask to_image method.
      [#1320]
  * photutils.background
    * Added an alpha keyword to the Background2D.plot_meshes
      method. [#1286]
    * Added a clip keyword to the BkgZoomInterpolator class.
      [#1324]
  * photutils.segmentation
    * Added SegmentationImage cmap attribute containing a default
      colormap. [#1319]
    * Improved the performance of SegmentationImage and
      SourceCatalog, especially for large data arrays. [#1320]
    * Added a convolved_data keyword to SourceCatalog. This is
      recommended instead of using the kernel keyword. [#1321]
  Bug Fixes
  * photutils.aperture
    * Fixed a bug in aperture_photometry where an error was not
      raised if the data and error arrays have different units.
      [#1285].
  * photutils.background
    * Fixed a bug in Background2D where using the pad edge method
      would result in incorrect image padding if only one of the
      axes needed padding. [#1292]
  * photutils.centroid
    * Fixed a bug in centroid_sources where setting error, xpeak,
      or ypeak to None would result in an error. [#1297]
    * Fixed a bug in centroid_quadratic where inputting a mask
      would alter the input data array. [#1317]
  * photutils.segmentation
    * Fixed a bug in SourceCatalog where a UFuncTypeError would be
      raised if the input data had an integer dtype [#1312].
  API Changes
  * photutils.aperture
    * A ValueError is now raised if non-positive sizes are input to
      sky-based apertures. [#1295]
    * The BoundingBox.plot() method now returns a
      matplotlib.patches.Patch object. [#1305]
    * Inputting PixelAperture positions as an Astropy Quantity in
      pixel units is deprecated. [#1310]
    * Inputting SkyAperture shape parameters as an Astropy Quantity
      in pixel units is deprecated. [#1310]
  * photutils.background
    * Removed the deprecated background_mesh_ma and
      background_rms_mesh_ma Background2D properties. [#1280]
    * By default, BkgZoomInterpolator uses clip=True to prevent the
      interpolation from producing values outside the given input
      range. If backwards-compatiblity is needed with older
      Photutils versions, set clip=False. [#1324]
  * photutils.centroid
    * Removed the deprecated centroid_epsf and gaussian1d_moments
      functions. [#1280]
    * Importing tools from the centroids subpackage now requires
      including the subpackage name. [#1280]
  * photutils.morphology
    * Importing tools from the morphology subpackage now requires
      including the subpackage name. [#1280]
  * photutils.segmentation
    * Removed the deprecated source_properties function and the
      SourceProperties and LegacySourceCatalog classes. [#1280]
    * Removed the deprecated the filter_kernel keyword in the
      detect_sources, deblend_sources, and make_source_mask
      functions. [#1280]
    * A TypeError is raised if the input array to SegmentationImage
      does not have integer type. [#1319]
    * A SegmentationImage may contain an array of all zeros.
      [#1319]
    * Deprecated the mask_value keyword in detect_threshold. Use
      the mask keyword instead. [#1322]
    * Deprecated the filter_fwhm and filter_size keywords in
      make_source_mask. Use the kernel keyword instead. [#1322]

-------------------------------------------------------------------
Fri Dec 24 14:06:32 UTC 2021 - Ben Greiner <code@bnavigator.de>

- Update to 1.3.0
  General
  * The metadata in output tables now contains version information
    for all dependencies. [#1274]
  New Features
  * photutils.centroid
    * Extra keyword arguments can be input to centroid_sources that
      are then passed on to the centroid_func if supported.
      [#1276,#1278]
  * photutils.segmentation
    * Added copy method to SourceCatalog. [#1264]
    * Added kron_photometry method to SourceCatalog. [#1264]
    * Added add_extra_property, remove_extra_property,
      remove_extra_properties, and rename_extra_property methods
      and extra_properties attribute to SourceCatalog. [#1264,
      #1268]
    * Added name and overwrite keywords to SourceCatalog
      circular_photometry and fluxfrac_radius methods. [#1264]
    * SourceCatalog fluxfrac_radius was improved for cases where
      the source flux doesn't monotonically increase with
      increasing radius. [#1264]
    * Added meta and properties attributes to SourceCatalog.
      [#1268]
    * The SourceCatalog output table (using to_table) meta
      dictionary now includes a field for the date/time. [#1268]
    * Added SourceCatalog make_kron_apertures method. [#1268]
    * Added SourceCatalog plot_circular_apertures and
      plot_kron_apertures methods. [#1268]
  Bug fixes
  * photutils.segmentation
    * If detection_catalog is input to SourceCatalog then the
      detection centroids are used to calculate the
      circular_aperture, circular_photometry, and fluxfrac_radius.
      [#1264]
    * Units are applied to SourceCatalog circular_photometry output
      if the input data has units. [#1264]
    * SourceCatalog circular_photometry returns scalar values if
      catalog is scalar. [#1264]
    * SourceCatalog fluxfrac_radius returns a Quantity with pixel
      units. [#1264]
    * Fixed a bug where the SourceCatalog detection_catalog was not
      indexed/sliced when SourceCatalog was indexed/sliced. [#1268]
    * SourceCatalog circular_photometry now returns NaN for
      completely-masked sources. [#1268]
    * SourceCatalog kron_flux is always NaN for sources where
      kron_radius is NaN. [#1268]
    * SourceCatalog fluxfrac_radius now returns NaN if kron_flux is
      zero. [#1268]
  API changes
  * photutils.centroids
    * A ValueError is now raised in centroid_sources if the input
      xpos or ypos is outside of the input data. [#1276]
    * A ValueError is now raised in centroid_quadratic if the input
      xpeak or ypeak is outside of the input data. [#1276]
    * NaNs are now returned from centroid_sources where the
      centroid failed. This is usually due to a box_size that is
      too small when using a fitting-based centroid function.
      [#1276]
  * photutils.segmentation
    * Renamed the SourceCatalog circular_aperture method to
      make_circular_apertures. The old name is deprecated. [#1268]
    * The SourceCatalog kron_params keyword must have a minimum
      circular radius that is greater than zero. The default value
      is now 1.0. [#1268]
    * detect_sources now uses astropy.convolution.convolve, which
      allows for masking pixels. [#1269]

-------------------------------------------------------------------
Sun Sep 26 14:11:48 UTC 2021 - Ben Greiner <code@bnavigator.de>

- Update to 1.2.0
  * The minimum required scipy version is 1.6.0 [#1239]
  photutils.aperture
  * Added a mask keyword to the area_overlap method. [#1241]
  photutils.background
  * Improved the performance of Background2D by up to 10-50% when
    the optional bottleneck package is installed. [#1232]
  * Added a masked keyword to the background classes
    MeanBackground, MedianBackground, ModeEstimatorBackground,
    MMMBackground, SExtractorBackground,
    BiweightLocationBackground, StdBackgroundRMS,
    MADStdBackgroundRMS, and BiweightScaleBackgroundRMS. [#1232]
  * Enable all background classes to work with Quantity inputs.
    [#1233]
  * Added a markersize keyword to the Background2D method
    plot_meshes. [#1234]
  * Added __repr__ methods to all background classes. [#1236]
  * Added a grid_mode keyword to BkgZoomInterpolator. [#1239]
  photutils.detection
  * Added a xycoords keyword to DAOStarFinder and IRAFStarFinder.
    [#1248]
  photutils.psf
  * Enabled the reuse of an output table from BasicPSFPhotometry
    and its subclasses as an initial guess for another photometry
    run. [#1251]
  * Added the ability to skip the group_maker step by inputing an
    initial guess table with a group_id column. [#1251]
  photutils.aperture
  * Fixed a bug when converting between pixel and sky apertures
    with a gwcs object. [#1221]
  photutils.background
  * Fixed an issue where Background2D could fail when using the
    'pad' edge method. [#1227]
  photutils.detection
  * Fixed the DAOStarFinder import deprecation message. [#1195]
  photutils.morphology
  * Fixed an issue in data_properties where a scalar background
    input would raise an error. [#1198]
  photutils.psf
  * Fixed an issue in prepare_psf_model when xname or yname was
    None where the model offsets were applied in the wrong
    direction, resulting in the initial photometry guesses not
    being improved by the fit. [#1199]
  photutils.segmentation
  * Fixed an issue in SourceCatalog where the user-input mask was
    ignored when apermask_method='correct' for Kron-related
    calculations. [#1210]
  * Fixed an issue in SourceCatalog where the segment array could
    incorrectly have units. [#1220]
  photutils.utils
  * Fixed an issue in ShepardIDWInterpolator to allow its
    initialization with scalar data values and coordinate arrays
    having more than one dimension. [#1226]
  API changes
  photutils.aperture
  * The ApertureMask.get_values() function now returns an empty
    array if there is no overlap with the data. [#1212]
  * Removed the deprecated BoundingBox.slices and PixelAperture.
    bounding_boxes attributes. [#1215]
  photutils.background
  * Invalid data values (i.e., NaN or inf) are now automatically
    masked in Background2D. [#1232]
  * The background classes MeanBackground, MedianBackground,
    ModeEstimatorBackground, MMMBackground, SExtractorBackground,
    BiweightLocationBackground, StdBackgroundRMS,
    MADStdBackgroundRMS, and BiweightScaleBackgroundRMS now return
    by default a numpy.ndarray with np.nan values representing
    masked pixels instead of a masked array. A masked array can be
    returned by setting masked=True. [#1232]
  * Deprecated the Background2D attributes background_mesh_ma and
    background_rms_mesh_ma. They have been renamed to
    background_mesh_masked and background_rms_mesh_masked. [#1232]
  * By default, BkgZoomInterpolator now uses grid_mode=True. For
    zooming 2D images, this keyword should be set to True, which
    makes the interpolator’s behavior consistent with scipy.
    ndimage.map_coordinates, skimage.transform.resize, and OpenCV
    (cv2.resize). If backwards-compatiblity is needed with older
    Photutils’ versions, set grid_mode=False. [#1239]
  photutils.centroid
  * Deprecated the gaussian1d_moments and centroid_epsf functions.
    [#1240]
  photutils.datasets
  * Removed the deprecated random_state keyword in the
    apply_poisson_noise, make_noise_image,
    make_random_models_table, and make_random_gaussians_table
    functions. [#1244]
  * make_random_models_table and make_random_gaussians_table now
    return an astropy QTable with version metadata. [#1247]
  photutils.detection
  * DAOStarFinder, IRAFStarFinder, and find_peaks now return an
    astropy QTable with version metadata. [#1247]
  * The StarFinder label column was renamed to id for consistency
    with the other star finder classes. [#1254]
  photutils.isophote
  * The Isophote to_table method nows return an astropy QTable
    with version metadata. [#1247]
  photutils.psf
  * BasicPSFPhotometry, IterativelySubtractedPSFPhotometry, and
    DAOPhotPSFPhotometry now return an astropy QTable with version
    metadata. [#1247]
  photutils.segmentation
  * Deprecated the filter_kernel keyword in the detect_sources,
    deblend_sources, and make_source_mask functions. It has been
    renamed to simply kernel for consistency with SourceCatalog.
    [#1242]
  * Removed the deprecated random_state keyword in the make_cmap
    method. [#1244]
  * The SourceCatalog to_table method nows return an astropy
    QTable with version metadata. [#1247]
  photutils.utils
  * Removed the deprecated check_random_state function. [#1244]
  * Removed the deprecated random_state keyword in the
    make_random_cmap function. [#1244]

-------------------------------------------------------------------
Sat Mar 20 18:02:02 UTC 2021 - Ben Greiner <code@bnavigator.de>

- Update ot Version 1.1.0
  General
  -------
  * The minimum required python version is 3.7. [#1120]
  New Features
  ------------
  photutils.aperture
  * The PixelAperture.plot() method now returns a list of
    matplotlib.patches.Patch objects. [#923]
  * Added an area_overlap method for PixelAperture objects that
    gives the overlapping area of the aperture on the data. [#874]
  * Added a get_overlap_slices method and a center attribute to
    BoundingBox. [#1157]
  * Added a get_values method to ApertureMask that returns a 1D
    array of mask-weighted values. [#1158, #1161]
  * Added get_overlap_slices method to ApertureMask. [#1165]
  photutils.background
  * The Background2D class now accepts astropy NDData,
    CCDData, and Quantity objects as data inputs. [#1140]
  photutils.detection
  * Added a StarFinder class to detect stars with a user-defined
    kernel. [#1182]
  photutils.isophote
  * Added the ability to specify the output columns in the
    IsophoteList to_table method. [#1117]
  photutils.psf
  * The EPSFStars class is now usable with multiprocessing. 
    [#1152]
  * Slicing EPSFStars now returns an EPSFStars instance. [#1185]
  photutils.segmentation
  * Added a modified, significantly faster, SourceCatalog class.
    [#1170, #1188, #1191]
  * Added circular_aperture and circular_phometry methods to the
    SourceCatalog class. [#1188]
  * Added fwhm property to the SourceCatalog class. [#1191]
  * Added fluxfrac_radius method to the SourceCatalog class.
    [#1192]
  * Added a bbox attribute to SegmentationImage. [#1187]
  Bug Fixes
  ---------
  photutils.aperture
  * Slicing a scalar Aperture object now raises an informative
    error
    message. [#1154]
  * Fixed an issue where ApertureMask.multiply fill_value was
    not applied to pixels outside of the aperture mask, but within the
    aperture bounding box. [#1158]
  * Fixed an issue where ApertureMask.cutout would raise an error
    if fill_value was non-finite and the input array was integer
    type. [#1158]
  * Fixed an issue where RectangularAnnulus with a non-default
    h_in would give an incorrect ApertureMask. [#1160]
  photutils.isophote
  * Fix computation of gradient relative error when gradient=0.
    [#1180]
  photutils.psf
  * Fixed a bug in EPSFBuild where a warning was raised if the
    input smoothing_kernel was an numpy.ndarray. [#1146]
  * Fixed a bug that caused photometry to fail on an EPSFmodel
    with multiple stars in a group. [#1135]
  * Added a fallback aperture_radius for PSF models without a FWHM
    or sigma attribute, raising a warning. [#740]
  photutils.segmentation
  * Fixed SourceProperties local_background to work with
    Quantity data inputs. [#1162]
  * Fixed SourceProperties local_background for sources near the
    image edges. [#1162]
  * Fixed SourceProperties kron_radius for sources that are
    completely masked. [#1164]
  * Fixed SourceProperties Kron properties for sources near the
    image edges. [#1167]
  * Fixed SourceProperties Kron mask correction. [#1167]
  API changes
  -----------
  photutils.aperture
  * Deprecated the BoundingBox slices attribute. Use the
    get_overlap_slices method instead. [#1157]
  photutils.centroid
  * Removed the deprecated fit_2dgaussian function and
    GaussianConst2D class. [#1147]
  * Importing tools from the centroids subpackge without
    including the subpackage name is deprecated. [#1190]
  photutils.morphology
  * Importing tools from the morphology subpackge without
    including the subpackage name is deprecated. [#1190]
  photutils.segmentation
  * Deprecated the "mask_all" option in the SourceProperties
    kron_params keyword. [#1167]
  * Deprecated source_properties, SourceProperties, and
    LegacySourceCatalog.  Use the new SourceCatalog function
    instead. [#1170]
  * The detect_threshold function was moved to the segmentation
    subpackage. [#1171]
  * Removed the ability to slice SegmentationImage. Instead slice
    the segments attribute. [#1187]

-------------------------------------------------------------------
Wed Jan 20 23:50:38 UTC 2021 - Benjamin Greiner <code@bnavigator.de>

- Update to Version 1.0.2
  General
  ------
  photutils.background
  * Improved the performance of Background2D (e.g., by a 
    factor of ~4 with 2048x2048 input arrays when using the 
    default interpolator). [#1103, #1108]
  Bug Fixes
  --------
  photutils.background
  * Fixed a bug with Background2D where using 
    BkgIDWInterpolator would give incorrect results. 
    [#1104]
  photutils.isophote
  * Corrected calculations of upper harmonics and their 
    errors [#1089]
  * Fixed bug that caused an infinite loop when the sample 
    extracted from an image has zero length. [#1129]
  * Fixed a bug where the default fixed_parameters in 
    EllipseSample.update() were not defined. [#1139]
  photutils.psf
  * Fixed a bug where very incorrect PSF-fitting 
    uncertainties could be returned when the astropy fitter 
    did not return fit uncertainties. [#1143]
  photutils.segmentation
  * Fixed an issue where negative Kron radius values could 
    be returned, which would cause an error when 
    calculating Kron fluxes. [#1132]
  * Fixed an issue where an error was raised with 
    SegmentationImage.remove_border_labels() with 
    relabel=True when no segments remain. [#1133]
  photutils.psf
  * Changed the default recentering_func in EPSFBuilder, to 
    avoid convergence issues. [#1144]
- Drop photutils-ease-background2d-tests.patch fixed upstream
  gh#astropy/photutils#1145 
 
-------------------------------------------------------------------
Fri Jan 15 14:57:42 UTC 2021 - Benjamin Greiner <code@bnavigator.de>

- Add photutils-ease-background2d-tests.patch -- ease precision
  tolerance in background 2D tests gh#astropy/photutils#1145

-------------------------------------------------------------------
Fri Sep 25 11:41:40 UTC 2020 - Benjamin Greiner <code@bnavigator.de>

- Update to Version 1.0.1
  Bug Fixes
  * photutils.psf
    Fixed checks on oversampling factors. [#1086]

-------------------------------------------------------------------
Wed Sep 23 09:24:36 UTC 2020 - Benjamin Greiner <code@bnavigator.de>

- Update to Version 1.0.0
  General
  * The minimum required python version is 3.6. [#952]
  * The minimum required astropy version is 4.0. [#1081]
  * The minimum required numpy version is 1.17. [#1079]
  * Removed astropy-helpers and updated the package 
    infrastructure as described in Astropy APE 17. [#915]
  New Features
  * photutils.aperture
  * Added b_in as an optional ellipse annulus keyword. [#1070]
  * Added h_in as an optional rectangle annulus keyword. 
    [#1070]
  * photutils.background
  * Added coverage_mask and fill_value keyword options to 
    Background2D. [#1061]
  * photutils.centroids
  * Added quadratic centroid estimator function 
    (centroid_quadratic). [#1067]
  * photutils.psf
  * Added the ability to use odd oversampling factors in 
    EPSFBuilder. [#1076]
  * photutils.segmentation
  * Added Kron radius, flux, flux error, and aperture to 
    SourceProperties. [#1068]
  * Added local background to SourceProperties. [#1075]
  Bug Fixes
  * photutils.isophote
  * Fixed a typo in the calculation of the b4 higher-order 
    harmonic coefficient in build_ellipse_model. [#1052]
  * Fixed a bug where build_ellipse_model falls into an 
    infinite loop when the pixel to fit is outside of the 
    image. [#1039]
  * Fixed a bug where build_ellipse_model falls into an 
    infinite loop under certain image/parameters input 
    combinations. [#1056]
  * photutils.psf
  * Fixed a bug in subtract_psf caused by using a fill_value of 
    np.nan with an integer input array. [#1062]
  * photutils.segmentation
  * Fixed a bug where source_properties would fail with 
    unitless gwcs.wcs.WCS objects. [#1020]
  * photutils.utils
  * The effective_gain parameter in calc_total_error can now be 
    zero (or contain zero values). [#1019]
  API changes
  * photutils.aperture
  * Aperture pixel positions can no longer be shaped as 2xN. 
    [#953]
  * Removed the deprecated units keyword in aperture_photometry 
    and PixelAperture.do_photometry. [#953]
  * PrimaryHDU, ImageHDU, and HDUList can no longer be input to 
    aperture_photometry. [#953]
  * Removed the deprecated the Aperture mask_area method. 
    [#953]
  * Removed the deprecated Aperture plot keywords ax and 
    indices. [#953]
  * photutils.background
  * Removed the deprecated ax keyword in 
    Background2D.plot_meshes. [#953]
  * Background2D keyword options can not be input as positional 
    arguments. [#1061]
  * photutils.centroids
  * centroid_1dg, centroid_2dg, gaussian1d_moments, 
    fit_2dgaussian, and GaussianConst2D have been moved to a 
    new photutils.centroids.gaussian module. [#1064]
  * Deprecated fit_2dgaussian and GaussianConst2D. [#1064]
  * photutils.datasets
  * Removed the deprecated type keyword in make_noise_image. 
    [#953]
  * Renamed the random_state keyword (deprecated) to seed in 
    apply_poisson_noise, make_noise_image, 
    make_random_models_table, and make_random_gaussians_table 
    functions. [#1080]
  * photutils.detection
  * Removed the deprecated snr keyword in detect_threshold. 
    [#953]
  * photutils.psf
  * Added flux_residual_sigclip as an input parameter, allowing 
    for custom sigma clipping options in EPSFBuilder. [#984]
  * Added extra_output_cols as a parameter to 
    BasicPSFPhotometry, IterativelySubtractedPSFPhotometry and 
    DAOPhotPSFPhotometry. [#745]
  * photutils.segmentation
  * Removed the deprecated SegmentationImage methods cmap and 
    relabel. [#953]
  * Removed the deprecated SourceProperties values and coords 
    attributes. [#953]
  * Removed the deprecated xmin/ymin and xmax/ymax properties. 
    [#953]
  * Removed the deprecated snr and mask_value keywords in 
    make_source_mask. [#953]
  * Renamed the random_state keyword (deprecated) to seed in 
    the make_cmap method. [#1080]
  * photutils.utils
  * Removed the deprecated random_cmap, mask_to_mirrored_num, 
    get_version_info, filter_data, and std_blocksum functions. 
    [#953]
  * Removed the deprecated wcs_helpers functions 
    pixel_scale_angle_at_skycoord, assert_angle_or_pixel, 
    assert_angle, and pixel_to_icrs_coords. [#953]
  * Deprecated the check_random_state function. [#1080]
  * Renamed the random_state keyword (deprecated) to seed in 
    the make_random_cmap function. [#1080] 
- Drop patches merged upstream
  * 0001-aperture-mask-test-assert-almost-equal.patch
  * photutils-pr1041-update-watershed-import.patch
  
-------------------------------------------------------------------
Fri Aug 14 09:13:48 UTC 2020 - Benjamin Greiner <code@bnavigator.de>

- add photutils-pr1041-update-watershed-import.patch to fix failing
  test gh#astropy/photutils#1041

-------------------------------------------------------------------
Fri Jul 17 11:35:55 UTC 2020 - Benjamin Greiner <code@bnavigator.de>

- actually detect failures with sys.exit(photutils.test())

-------------------------------------------------------------------
Mon Jul 13 18:40:46 UTC 2020 - Benjamin Greiner <code@bnavigator.de>

- fix failing tests: use astropy's test suite logic to call pytest 
- add URL for 0001-aperture-mask-test-assert-almost-equal.patch
  gh#astropy/photutils#1014

-------------------------------------------------------------------
Fri Jan 24 17:09:13 UTC 2020 - Benjamin Greiner <code@bnavigator.de>

- 0001-aperture-mask-test-assert-almost-equal.patch:
  upstream PR#1014 to avoid occasionally failing builds

-------------------------------------------------------------------
Wed Dec 11 14:44:27 UTC 2019 - Benjamin Greiner <code@bnavigator.de>

- update to version 0.7.2:
  photutils.isophote
    * Fixed computation of upper harmonics a3, b3, a4, and b4 
       in the ellipse fitting algorithm. [#1008]
  photutils.psf 
    * Fix to algorithm in EPSFBuilder, addressing issues where
      ePSFs failed to build (yielding striped ePSFs). [#974]
    * Fix to IterativelySubtractedPSFPhotometry where an error
      could be thrown when a Finder was passed which did not 
      return None if no sources were found. [#986]
    * Fix to centroid_epsf where the wrong oversampling factor
      was used along the y axis. [#1002]
- needs new python-pytest-astropy 0.7 because of -header package
- fix clean c source files

-------------------------------------------------------------------
Thu Oct 10 09:48:35 UTC 2019 - Benjamin Greiner <code@bnavigator.de>

- update to version 0.7.1

-------------------------------------------------------------------
Sat Sep 14 12:17:38 UTC 2019 - Benjamin Greiner <code@bnavigator.de>

- remove generated c source files

-------------------------------------------------------------------
Sat Sep 14 09:49:39 UTC 2019 - Benjamin Greiner <code@bnavigator.de>

- new version 0.7

-------------------------------------------------------------------
Wed Apr 24 14:34:08 UTC 2019 - Benjamin Greiner <code@bnavigator.de>

- add astropy helpers

-------------------------------------------------------------------
Wed Apr 24 14:23:15 UTC 2019 - Benjamin Greiner <code@bnavigator.de>

- add dmb and scikit-* modules to build deps for module tests

-------------------------------------------------------------------
Wed Apr 24 14:13:37 UTC 2019 - Benjamin Greiner <code@bnavigator.de>

- add numpy-devel as dep

-------------------------------------------------------------------
Wed Apr 24 14:09:05 UTC 2019 - Benjamin Greiner <code@bnavigator.de>

- fix deps typos

-------------------------------------------------------------------
Wed Apr 24 14:07:25 UTC 2019 - Benjamin Greiner <code@bnavigator.de>

- initial spec

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