File R-sccore.spec of Package R-sccore

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File R-sccore.spec of Package R-sccore

# Automatically generated by CRAN2OBS
# 
# Spec file for package sccore 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2024 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  sccore 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.0.5 
Release:        0 
Summary:        Core Utilities for Single-Cell RNA-Seq 
Group:          Development/Libraries/Other 
License:        GPL-3 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         sccore_1.0.5.tar.gz 
Requires:       R-base 
Requires:	R-dplyr
Requires:	R-ggplot2
Requires:	R-ggrepel
Requires:	R-igraph
Requires:	R-irlba
Requires:	R-magrittr
Requires:	R-pbmcapply
Requires:	R-pROC
Requires:	R-Rcpp
Requires:	R-rlang
Requires:	R-scales
Requires:	R-tibble
Requires:	R-uwot
Requires:	R-withr
Requires:	R-RcppArmadillo
Requires:	R-RcppProgress
Requires:	R-RcppEigen
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-pillar
Requires:	R-R6
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-pkgconfig
Requires:	R-cpp11
Requires:	R-plyr
Requires:	R-farver
Requires:	R-labeling
Requires:	R-munsell
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-fansi
Requires:	R-FNN
Requires:	R-RcppAnnoy
Requires:	R-RSpectra
Requires:	R-dqrng
Requires:	R-BH
Requires:	R-sitmo
Requires:	R-colorspace
Requires:	R-utf8
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-dplyr
BuildRequires: 	R-ggplot2
BuildRequires: 	R-ggrepel
BuildRequires: 	R-igraph
BuildRequires: 	R-irlba
BuildRequires: 	R-magrittr
BuildRequires: 	R-pbmcapply
BuildRequires: 	R-pROC
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-rlang
BuildRequires: 	R-scales
BuildRequires: 	R-tibble
BuildRequires: 	R-uwot-devel
BuildRequires: 	R-withr
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-RcppProgress
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-cli
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-plyr
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-munsell
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-fansi
BuildRequires: 	R-FNN
BuildRequires: 	R-RcppAnnoy
BuildRequires: 	R-RSpectra-devel
BuildRequires: 	R-dqrng
BuildRequires: 	R-BH-devel
BuildRequires: 	R-sitmo
BuildRequires: 	R-colorspace
BuildRequires: 	R-utf8
BuildRequires:  gcc gcc-c++ gcc-fortran
 
Suggests:	R-ggrastr
Suggests:	R-jsonlite
Suggests:	R-rmumps
Suggests:	R-testthat
%description 
Core utilities for single-cell RNA-seq data analysis. Contained within 
are utility functions for working with differential expression (DE) 
matrices and count matrices, a collection of functions for manipulating 
and plotting data via 'ggplot2', and functions to work with cell graphs 
and cell embeddings. Graph-based methods include embedding kNN cell 
graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of 
each cluster in the graph, and propagating graph labels. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%doc %{rlibdir}/%{packname}/extdata
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/include
%{rlibdir}/%{packname}/libs
%{rlibdir}/%{packname}/
 
%changelog

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File R-sccore.spec of Package R-sccore

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