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R-mxnorm
R-mxnorm.spec
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File R-mxnorm.spec of Package R-mxnorm
# Automatically generated by CRAN2OBS # # Spec file for package mxnorm # This file is auto-generated using information in the package source, # esp. Description and Summary. Improvements in that area should be # discussed with upstream. # # Copyright (c) 2024 SUSE LINUX GmbH, Nuernberg, Germany. # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # # Please submit bugfixes or comments via http://bugs.opensuse.org/ # %global packname mxnorm %global rlibdir %{_libdir}/R/library Name: R-%{packname} Version: 1.0.3 Release: 0 Summary: Apply Normalization Methods to Multiplexed Images Group: Development/Libraries/Other License: MIT + file LICENSE URL: http://cran.r-project.org/web/packages/%{packname} Source: mxnorm_1.0.3.tar.gz Requires: R-base Requires: R-magrittr Requires: R-dplyr Requires: R-rlang Requires: R-fda Requires: R-data.table Requires: R-reticulate Requires: R-caret Requires: R-e1071 Requires: R-ggplot2 Requires: R-tidyr Requires: R-uwot Requires: R-lme4 Requires: R-stringr Requires: R-kSamples Requires: R-psych Requires: R-fossil Requires: R-glue Requires: R-foreach Requires: R-ModelMetrics Requires: R-plyr Requires: R-pROC Requires: R-recipes Requires: R-reshape2 Requires: R-withr Requires: R-cli Requires: R-generics Requires: R-lifecycle Requires: R-pillar Requires: R-R6 Requires: R-tibble Requires: R-tidyselect Requires: R-vctrs Requires: R-proxy Requires: R-fds Requires: R-deSolve Requires: R-sp Requires: R-maps Requires: R-shapefiles Requires: R-gtable Requires: R-isoband Requires: R-scales Requires: R-SuppDists Requires: R-minqa Requires: R-nloptr Requires: R-Rcpp Requires: R-RcppEigen Requires: R-mnormt Requires: R-RcppTOML Requires: R-here Requires: R-jsonlite Requires: R-png Requires: R-rappdirs Requires: R-stringi Requires: R-purrr Requires: R-cpp11 Requires: R-FNN Requires: R-irlba Requires: R-RcppAnnoy Requires: R-RSpectra Requires: R-dqrng Requires: R-RcppProgress Requires: R-BH Requires: R-sitmo Requires: R-rainbow Requires: R-RCurl Requires: R-iterators Requires: R-rprojroot Requires: R-testthat Requires: R-fansi Requires: R-utf8 Requires: R-clock Requires: R-ellipsis Requires: R-gower Requires: R-hardhat Requires: R-ipred Requires: R-lubridate Requires: R-timeDate Requires: R-farver Requires: R-labeling Requires: R-munsell Requires: R-RColorBrewer Requires: R-viridisLite Requires: R-pkgconfig Requires: R-tzdb Requires: R-prodlim Requires: R-timechange Requires: R-colorspace Requires: R-pcaPP Requires: R-hdrcde Requires: R-ks Requires: R-bitops Requires: R-brio Requires: R-callr Requires: R-desc Requires: R-digest Requires: R-evaluate Requires: R-pkgload Requires: R-praise Requires: R-processx Requires: R-ps Requires: R-waldo Requires: R-locfit Requires: R-ash Requires: R-kernlab Requires: R-mclust Requires: R-multicool Requires: R-mvtnorm Requires: R-pracma Requires: R-crayon Requires: R-fs Requires: R-pkgbuild Requires: R-diagram Requires: R-lava Requires: R-diffobj Requires: R-rematch2 Requires: R-shape Requires: R-future.apply Requires: R-numDeriv Requires: R-progressr Requires: R-SQUAREM Requires: R-future Requires: R-globals Requires: R-listenv Requires: R-parallelly # %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} # # Three others commonly needed # BuildRequires: tex(ae.sty) # BuildRequires: tex(fancyvrb.sty) # BuildRequires: tex(inconsolata.sty) # BuildRequires: tex(natbib.sty) # %else # BuildRequires: texlive # %endif # BuildRequires: texinfo BuildRequires: fdupes BuildRequires: R-base BuildRequires: R-magrittr BuildRequires: R-dplyr BuildRequires: R-rlang BuildRequires: R-fda BuildRequires: R-data.table BuildRequires: R-reticulate BuildRequires: R-caret BuildRequires: R-e1071 BuildRequires: R-ggplot2 BuildRequires: R-tidyr BuildRequires: R-uwot-devel BuildRequires: R-lme4 BuildRequires: R-stringr BuildRequires: R-kSamples BuildRequires: R-psych BuildRequires: R-fossil BuildRequires: R-glue BuildRequires: R-foreach BuildRequires: R-ModelMetrics BuildRequires: R-plyr BuildRequires: R-pROC BuildRequires: R-recipes BuildRequires: R-reshape2 BuildRequires: R-withr BuildRequires: R-cli BuildRequires: R-generics BuildRequires: R-lifecycle BuildRequires: R-pillar BuildRequires: R-R6 BuildRequires: R-tibble BuildRequires: R-tidyselect BuildRequires: R-vctrs BuildRequires: R-proxy BuildRequires: R-fds BuildRequires: R-deSolve-devel BuildRequires: R-sp BuildRequires: R-maps BuildRequires: R-shapefiles BuildRequires: R-gtable BuildRequires: R-isoband BuildRequires: R-scales BuildRequires: R-SuppDists BuildRequires: R-minqa BuildRequires: R-nloptr BuildRequires: R-Rcpp-devel BuildRequires: R-RcppEigen-devel BuildRequires: R-mnormt BuildRequires: R-RcppTOML-devel BuildRequires: R-here BuildRequires: R-jsonlite BuildRequires: R-png BuildRequires: R-rappdirs BuildRequires: R-stringi BuildRequires: R-purrr BuildRequires: R-cpp11-devel BuildRequires: R-FNN BuildRequires: R-irlba BuildRequires: R-RcppAnnoy BuildRequires: R-RSpectra-devel BuildRequires: R-dqrng BuildRequires: R-RcppProgress BuildRequires: R-BH-devel BuildRequires: R-sitmo BuildRequires: R-rainbow BuildRequires: R-RCurl BuildRequires: R-iterators BuildRequires: R-rprojroot BuildRequires: R-testthat BuildRequires: R-fansi BuildRequires: R-utf8 BuildRequires: R-clock BuildRequires: R-ellipsis BuildRequires: R-gower BuildRequires: R-hardhat BuildRequires: R-ipred BuildRequires: R-lubridate BuildRequires: R-timeDate BuildRequires: R-farver BuildRequires: R-labeling BuildRequires: R-munsell BuildRequires: R-RColorBrewer BuildRequires: R-viridisLite BuildRequires: R-pkgconfig BuildRequires: R-tzdb BuildRequires: R-prodlim BuildRequires: R-timechange BuildRequires: R-colorspace BuildRequires: R-pcaPP BuildRequires: R-hdrcde BuildRequires: R-ks BuildRequires: R-bitops BuildRequires: R-brio BuildRequires: R-callr BuildRequires: R-desc BuildRequires: R-digest BuildRequires: R-evaluate BuildRequires: R-pkgload BuildRequires: R-praise BuildRequires: R-processx BuildRequires: R-ps BuildRequires: R-waldo BuildRequires: R-locfit BuildRequires: R-ash BuildRequires: R-kernlab BuildRequires: R-mclust BuildRequires: R-multicool BuildRequires: R-mvtnorm BuildRequires: R-pracma BuildRequires: R-crayon BuildRequires: R-fs BuildRequires: R-pkgbuild BuildRequires: R-diagram BuildRequires: R-lava BuildRequires: R-diffobj BuildRequires: R-rematch2 BuildRequires: R-shape BuildRequires: R-future.apply BuildRequires: R-numDeriv BuildRequires: R-progressr BuildRequires: R-SQUAREM BuildRequires: R-future BuildRequires: R-globals BuildRequires: R-listenv BuildRequires: R-parallelly Suggests: R-knitr Suggests: R-janitor Suggests: R-testthat Suggests: R-rmarkdown Suggests: R-markdown Suggests: R-covr %description Implements methods to normalize multiplexed imaging data, including statistical metrics and visualizations to quantify technical variation in this data type. Reference for methods listed here: Harris, C., Wrobel, J., & Vandekar, S. (2022). mxnorm: An R Package to Normalize Multiplexed Imaging Data. Journal of Open Source Software, 7(71), 4180, <doi:10.21105/joss.04180>. %prep %setup -q -c -n %{packname} # the next line is needed, because we build without --clean in between two packages rm -rf ~/.R %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css %fdupes -s %{buildroot}%{rlibdir} #%%check #%%{_bindir}/R CMD check %%{packname} %files %dir %{rlibdir}/%{packname} %doc %{rlibdir}/%{packname}/DESCRIPTION %{rlibdir}/%{packname}/INDEX %license %{rlibdir}/%{packname}/LICENSE %{rlibdir}/%{packname}/Meta %{rlibdir}/%{packname}/NAMESPACE %{rlibdir}/%{packname}/R %{rlibdir}/%{packname}/data %doc %{rlibdir}/%{packname}/doc %doc %{rlibdir}/%{packname}/help %doc %{rlibdir}/%{packname}/html %{rlibdir}/%{packname}/ %changelog
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