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File R-aSPU.spec of Package R-aSPU (Revision b191024606de0f40e3d74ebaa6ea8aac)

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# Automatically generated by CRAN2OBS
# 
# spec file for package aSPU 
# This file is (mostly) auto-generated using information 
# in the package source, esp. Description and Summary. 
# Improvements in that area should be discussed with upstream. 
# 
# Copyright (c) 2020 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  aSPU 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.49 
Release:        0 
Summary:        Adaptive Sum of Powered Score Test 
Group:          Development/Libraries/Other 
License:        GPL-3 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         aSPU_1.49.tar.gz 
BuildRoot:      %{_tmppath}/%{name}-%{version}-build 
Requires:       R-base 
Requires:	R-gee
Requires:	R-mvtnorm
Requires:	R-fields
Requires:	R-matrixStats
Requires:	R-spam
Requires:	R-maps
Requires:	R-dotCall64
 
%if 0%{?sle_version} > 120400 || 0%{?is_opensuse} 
# Three others commonly needed 
BuildRequires:  tex(ae.sty) 
BuildRequires:  tex(fancyvrb.sty) 
BuildRequires:  tex(inconsolata.sty) 
BuildRequires:  tex(natbib.sty) 
%else 
BuildRequires:  texlive 
%endif 
BuildRequires:   texinfo 
BuildRequires:   fdupes 
BuildRequires:   R-base 
BuildRequires: 	R-gee
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-fields
BuildRequires: 	R-matrixStats
BuildRequires: 	R-spam
BuildRequires: 	R-maps
BuildRequires: 	R-dotCall64
 
Recommends:	R-knitr
%description 
R codes for the (adaptive) Sum of Powered Score ('SPU' and 'aSPU') 
tests, inverse variance weighted Sum of Powered score ('SPUw' and 'aSPUw') tests 
and gene-based and some pathway based association tests (Pathway based Sum of 
Powered Score tests ('SPUpath'), adaptive 'SPUpath' ('aSPUpath') test, 'GEEaSPU' 
test for multiple traits - single 'SNP' (single nucleotide polymorphism) 
association in generalized estimation equations, 'MTaSPUs' test for multiple 
traits - single 'SNP' association with Genome Wide Association Studies ('GWAS') 
summary statistics, Gene-based Association Test that uses an extended 'Simes' 
procedure ('GATES'), Hybrid Set-based Test ('HYST') and extended version 
of 'GATES' test for pathway-based association testing ('GATES-Simes'). ). 
The tests can be used with genetic and other data sets with covariates. The 
response variable is binary or quantitative. Summary; (1) Single trait-'SNP' set 
association with individual-level data ('aSPU', 'aSPUw', 'aSPUr'), (2) Single trait-'SNP' 
set association with summary statistics ('aSPUs'), (3) Single trait-pathway 
association with individual-level data ('aSPUpath'), (4) Single trait-pathway 
association with summary statistics ('aSPUsPath'), (5) Multiple traits-single 
'SNP' association with individual-level data ('GEEaSPU'), (6) Multiple traits- 
single 'SNP' association with summary statistics ('MTaSPUs'), (7) Multiple traits-'SNP' set association with summary statistics('MTaSPUsSet'), (8) Multiple traits-pathway association with summary statistics('MTaSPUsSetPath'). 
 
%prep 
%setup -q -c -n %{packname} 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog

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File R-aSPU.spec of Package R-aSPU (Revision b191024606de0f40e3d74ebaa6ea8aac)

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