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R-ClustAssess
R-ClustAssess.spec
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File R-ClustAssess.spec of Package R-ClustAssess
# Automatically generated by CRAN2OBS # # Spec file for package ClustAssess # This file is auto-generated using information in the package source, # esp. Description and Summary. Improvements in that area should be # discussed with upstream. # # Copyright (c) 2024 SUSE LINUX GmbH, Nuernberg, Germany. # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # # Please submit bugfixes or comments via http://bugs.opensuse.org/ # %global packname ClustAssess %global rlibdir %{_libdir}/R/library Name: R-%{packname} Version: 0.3.0 Release: 0 Summary: Tools for Assessing Clustering Group: Development/Libraries/Other License: MIT + file LICENSE URL: http://cran.r-project.org/web/packages/%{packname} Source: ClustAssess_0.3.0.tar.gz Requires: R-base Requires: R-ggplot2 Requires: R-dplyr Requires: R-fastcluster Requires: R-rlang Requires: R-igraph Requires: R-magrittr Requires: R-Rcpp Requires: R-foreach Requires: R-doParallel Requires: R-irlba Requires: R-progress Requires: R-reshape2 Requires: R-stringr Requires: R-uwot Requires: R-iterators Requires: R-cli Requires: R-generics Requires: R-glue Requires: R-lifecycle Requires: R-pillar Requires: R-R6 Requires: R-tibble Requires: R-tidyselect Requires: R-vctrs Requires: R-gtable Requires: R-isoband Requires: R-scales Requires: R-withr Requires: R-pkgconfig Requires: R-cpp11 Requires: R-crayon Requires: R-hms Requires: R-prettyunits Requires: R-plyr Requires: R-stringi Requires: R-FNN Requires: R-RcppAnnoy Requires: R-RSpectra Requires: R-dqrng Requires: R-RcppProgress Requires: R-BH Requires: R-sitmo Requires: R-fansi Requires: R-utf8 Requires: R-RcppEigen Requires: R-farver Requires: R-labeling Requires: R-munsell Requires: R-RColorBrewer Requires: R-viridisLite Requires: R-colorspace # %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} # # Three others commonly needed # BuildRequires: tex(ae.sty) # BuildRequires: tex(fancyvrb.sty) # BuildRequires: tex(inconsolata.sty) # BuildRequires: tex(natbib.sty) # %else # BuildRequires: texlive # %endif # BuildRequires: texinfo BuildRequires: fdupes BuildRequires: R-base BuildRequires: R-ggplot2 BuildRequires: R-dplyr BuildRequires: R-fastcluster BuildRequires: R-rlang BuildRequires: R-igraph BuildRequires: R-magrittr BuildRequires: R-Rcpp-devel BuildRequires: R-foreach BuildRequires: R-doParallel BuildRequires: R-irlba BuildRequires: R-progress BuildRequires: R-reshape2 BuildRequires: R-stringr BuildRequires: R-uwot-devel BuildRequires: R-iterators BuildRequires: R-cli BuildRequires: R-generics BuildRequires: R-glue BuildRequires: R-lifecycle BuildRequires: R-pillar BuildRequires: R-R6 BuildRequires: R-tibble BuildRequires: R-tidyselect BuildRequires: R-vctrs BuildRequires: R-gtable BuildRequires: R-isoband BuildRequires: R-scales BuildRequires: R-withr BuildRequires: R-pkgconfig BuildRequires: R-cpp11-devel BuildRequires: R-crayon BuildRequires: R-hms BuildRequires: R-prettyunits BuildRequires: R-plyr BuildRequires: R-stringi BuildRequires: R-FNN BuildRequires: R-RcppAnnoy BuildRequires: R-RSpectra-devel BuildRequires: R-dqrng BuildRequires: R-RcppProgress BuildRequires: R-BH-devel BuildRequires: R-sitmo BuildRequires: R-fansi BuildRequires: R-utf8 BuildRequires: R-RcppEigen-devel BuildRequires: R-farver BuildRequires: R-labeling BuildRequires: R-munsell BuildRequires: R-RColorBrewer BuildRequires: R-viridisLite BuildRequires: R-colorspace BuildRequires: gcc gcc-c++ gcc-fortran Suggests: R-knitr Suggests: R-rmarkdown Suggests: R-e1071 Suggests: R-dbscan Suggests: R-dendextend Suggests: R-Seurat Suggests: R-readr Suggests: R-patchwork %description A set of tools for evaluating clustering robustness using proportion of ambiguously clustered pairs (Senbabaoglu et al. (2014) <doi:10.1038/srep06207>), as well as similarity across methods and method stability using element-centric clustering comparison (Gates et al. (2019) <doi:10.1038/s41598-019-44892-y>). Additionally, this package enables stability-based parameter assessment for graph-based clustering pipelines typical in single-cell data analysis. %prep %setup -q -c -n %{packname} # the next line is needed, because we build without --clean in between two packages rm -rf ~/.R %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css %fdupes -s %{buildroot}%{rlibdir} #%%check #%%{_bindir}/R CMD check %%{packname} %files %dir %{rlibdir}/%{packname} %doc %{rlibdir}/%{packname}/DESCRIPTION %{rlibdir}/%{packname}/INDEX %license %{rlibdir}/%{packname}/LICENSE %{rlibdir}/%{packname}/Meta %{rlibdir}/%{packname}/NAMESPACE %{rlibdir}/%{packname}/R %{rlibdir}/%{packname}/doc %doc %{rlibdir}/%{packname}/help %doc %{rlibdir}/%{packname}/html %{rlibdir}/%{packname}/libs %{rlibdir}/%{packname}/ %changelog
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