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R-APackOfTheClones
R-APackOfTheClones.spec
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File R-APackOfTheClones.spec of Package R-APackOfTheClones
# Automatically generated by CRAN2OBS # # Spec file for package APackOfTheClones # This file is auto-generated using information in the package source, # esp. Description and Summary. Improvements in that area should be # discussed with upstream. # # Copyright (c) 2024 SUSE LINUX GmbH, Nuernberg, Germany. # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # # Please submit bugfixes or comments via http://bugs.opensuse.org/ # %global packname APackOfTheClones %global rlibdir %{_libdir}/R/library Name: R-%{packname} Version: 1.2.0 Release: 0 Summary: Visualization of Clonal Expansion for Single Cell Immune Profiles Group: Development/Libraries/Other License: MIT + file LICENSE URL: http://cran.r-project.org/web/packages/%{packname} Source: APackOfTheClones_1.2.0.tar.gz Requires: R-base Requires: R-dplyr Requires: R-ggforce Requires: R-ggplot2 Requires: R-hash Requires: R-lifecycle Requires: R-magrittr Requires: R-Rcpp Requires: R-rlang Requires: R-Seurat Requires: R-SeuratObject Requires: R-cli Requires: R-generics Requires: R-glue Requires: R-pillar Requires: R-R6 Requires: R-tibble Requires: R-tidyselect Requires: R-vctrs Requires: R-scales Requires: R-tweenr Requires: R-gtable Requires: R-polyclip Requires: R-withr Requires: R-systemfonts Requires: R-RcppEigen Requires: R-isoband Requires: R-cowplot Requires: R-fastDummies Requires: R-fitdistrplus Requires: R-future Requires: R-future.apply Requires: R-ggrepel Requires: R-ggridges Requires: R-httr Requires: R-ica Requires: R-igraph Requires: R-irlba Requires: R-jsonlite Requires: R-leiden Requires: R-lmtest Requires: R-matrixStats Requires: R-miniUI Requires: R-patchwork Requires: R-pbapply Requires: R-plotly Requires: R-png Requires: R-progressr Requires: R-purrr Requires: R-RANN Requires: R-RColorBrewer Requires: R-RcppAnnoy Requires: R-RcppHNSW Requires: R-reticulate Requires: R-ROCR Requires: R-RSpectra Requires: R-Rtsne Requires: R-scattermore Requires: R-sctransform Requires: R-shiny Requires: R-spatstat.explore Requires: R-spatstat.geom Requires: R-uwot Requires: R-RcppProgress Requires: R-sp Requires: R-spam Requires: R-data.table Requires: R-stringr Requires: R-digest Requires: R-globals Requires: R-listenv Requires: R-parallelly Requires: R-curl Requires: R-mime Requires: R-openssl Requires: R-pkgconfig Requires: R-cpp11 Requires: R-zoo Requires: R-htmltools Requires: R-fansi Requires: R-utf8 Requires: R-viridisLite Requires: R-base64enc Requires: R-htmlwidgets Requires: R-tidyr Requires: R-lazyeval Requires: R-crosstalk Requires: R-promises Requires: R-RcppTOML Requires: R-here Requires: R-rappdirs Requires: R-gplots Requires: R-farver Requires: R-labeling Requires: R-munsell Requires: R-reshape2 Requires: R-gridExtra Requires: R-RcppArmadillo Requires: R-httpuv Requires: R-xtable Requires: R-fontawesome Requires: R-sourcetools Requires: R-later Requires: R-crayon Requires: R-fastmap Requires: R-commonmark Requires: R-bslib Requires: R-cachem Requires: R-dotCall64 Requires: R-spatstat.data Requires: R-spatstat.random Requires: R-spatstat.utils Requires: R-spatstat.sparse Requires: R-goftest Requires: R-abind Requires: R-deldir Requires: R-FNN Requires: R-dqrng Requires: R-jquerylib Requires: R-memoise Requires: R-sass Requires: R-BH Requires: R-sitmo Requires: R-gtools Requires: R-caTools Requires: R-rprojroot Requires: R-knitr Requires: R-rmarkdown Requires: R-yaml Requires: R-colorspace Requires: R-askpass Requires: R-plyr Requires: R-tensor Requires: R-stringi Requires: R-sys Requires: R-bitops Requires: R-evaluate Requires: R-highr Requires: R-xfun Requires: R-tinytex Requires: R-fs # %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} # # Three others commonly needed # BuildRequires: tex(ae.sty) # BuildRequires: tex(fancyvrb.sty) # BuildRequires: tex(inconsolata.sty) # BuildRequires: tex(natbib.sty) # %else # BuildRequires: texlive # %endif # BuildRequires: texinfo BuildRequires: fdupes BuildRequires: R-base BuildRequires: R-dplyr BuildRequires: R-ggforce BuildRequires: R-ggplot2 BuildRequires: R-hash BuildRequires: R-lifecycle BuildRequires: R-magrittr BuildRequires: R-Rcpp-devel BuildRequires: R-rlang BuildRequires: R-Seurat BuildRequires: R-SeuratObject BuildRequires: R-cli BuildRequires: R-generics BuildRequires: R-glue BuildRequires: R-pillar BuildRequires: R-R6 BuildRequires: R-tibble BuildRequires: R-tidyselect BuildRequires: R-vctrs BuildRequires: R-scales BuildRequires: R-tweenr BuildRequires: R-gtable BuildRequires: R-polyclip BuildRequires: R-withr BuildRequires: R-systemfonts BuildRequires: R-RcppEigen-devel BuildRequires: R-isoband BuildRequires: R-cowplot BuildRequires: R-fastDummies BuildRequires: R-fitdistrplus BuildRequires: R-future BuildRequires: R-future.apply BuildRequires: R-ggrepel BuildRequires: R-ggridges BuildRequires: R-httr BuildRequires: R-ica BuildRequires: R-igraph BuildRequires: R-irlba BuildRequires: R-jsonlite BuildRequires: R-leiden BuildRequires: R-lmtest BuildRequires: R-matrixStats BuildRequires: R-miniUI BuildRequires: R-patchwork BuildRequires: R-pbapply BuildRequires: R-plotly BuildRequires: R-png BuildRequires: R-progressr BuildRequires: R-purrr BuildRequires: R-RANN BuildRequires: R-RColorBrewer BuildRequires: R-RcppAnnoy BuildRequires: R-RcppHNSW BuildRequires: R-reticulate BuildRequires: R-ROCR BuildRequires: R-RSpectra-devel BuildRequires: R-Rtsne BuildRequires: R-scattermore BuildRequires: R-sctransform BuildRequires: R-shiny BuildRequires: R-spatstat.explore BuildRequires: R-spatstat.geom BuildRequires: R-uwot-devel BuildRequires: R-RcppProgress BuildRequires: R-sp BuildRequires: R-spam BuildRequires: R-data.table BuildRequires: R-stringr BuildRequires: R-digest BuildRequires: R-globals BuildRequires: R-listenv BuildRequires: R-parallelly BuildRequires: R-curl BuildRequires: R-mime BuildRequires: R-openssl BuildRequires: R-pkgconfig BuildRequires: R-cpp11-devel BuildRequires: R-zoo BuildRequires: R-htmltools BuildRequires: R-fansi BuildRequires: R-utf8 BuildRequires: R-viridisLite BuildRequires: R-base64enc BuildRequires: R-htmlwidgets BuildRequires: R-tidyr BuildRequires: R-lazyeval BuildRequires: R-crosstalk BuildRequires: R-promises BuildRequires: R-RcppTOML-devel BuildRequires: R-here BuildRequires: R-rappdirs BuildRequires: R-gplots BuildRequires: R-farver BuildRequires: R-labeling BuildRequires: R-munsell BuildRequires: R-reshape2 BuildRequires: R-gridExtra BuildRequires: R-RcppArmadillo-devel BuildRequires: R-httpuv BuildRequires: R-xtable BuildRequires: R-fontawesome BuildRequires: R-sourcetools-devel BuildRequires: R-later BuildRequires: R-crayon BuildRequires: R-fastmap BuildRequires: R-commonmark BuildRequires: R-bslib BuildRequires: R-cachem BuildRequires: R-dotCall64 BuildRequires: R-spatstat.data BuildRequires: R-spatstat.random BuildRequires: R-spatstat.utils BuildRequires: R-spatstat.sparse BuildRequires: R-goftest BuildRequires: R-abind BuildRequires: R-deldir BuildRequires: R-FNN BuildRequires: R-dqrng BuildRequires: R-jquerylib BuildRequires: R-memoise BuildRequires: R-sass BuildRequires: R-BH-devel BuildRequires: R-sitmo BuildRequires: R-gtools BuildRequires: R-caTools BuildRequires: R-rprojroot BuildRequires: R-knitr BuildRequires: R-rmarkdown BuildRequires: R-yaml BuildRequires: R-colorspace BuildRequires: R-askpass BuildRequires: R-plyr BuildRequires: R-tensor BuildRequires: R-stringi BuildRequires: R-sys BuildRequires: R-bitops BuildRequires: R-evaluate BuildRequires: R-highr BuildRequires: R-xfun BuildRequires: R-tinytex BuildRequires: R-fs BuildRequires: gcc gcc-c++ gcc-fortran Suggests: R-cowplot Suggests: R-covr Suggests: R-knitr Suggests: R-rmarkdown Suggests: R-sf Suggests: R-spelling Suggests: R-testthat Suggests: R-vdiffr %description Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles. The method was originally implemented by Murray Christian and Ben Murrell in the following immunology study: Ma et al. (2021) <doi:10.1126/sciimmunol.abg6356>. %prep %setup -q -c -n %{packname} # the next line is needed, because we build without --clean in between two packages rm -rf ~/.R %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css %fdupes -s %{buildroot}%{rlibdir} #%%check #%%{_bindir}/R CMD check %%{packname} %files %dir %{rlibdir}/%{packname} %{rlibdir}/%{packname}/CITATION %doc %{rlibdir}/%{packname}/DESCRIPTION %{rlibdir}/%{packname}/INDEX %license %{rlibdir}/%{packname}/LICENSE %{rlibdir}/%{packname}/Meta %{rlibdir}/%{packname}/NAMESPACE %{rlibdir}/%{packname}/R %{rlibdir}/%{packname}/WORDLIST %{rlibdir}/%{packname}/data %{rlibdir}/%{packname}/doc %doc %{rlibdir}/%{packname}/help %doc %{rlibdir}/%{packname}/html %{rlibdir}/%{packname}/libs %{rlibdir}/%{packname}/ %changelog
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