Revisions of gromacs

Atri Bhattacharya's avatar Atri Bhattacharya (badshah400) accepted request 973086 from Jan Engelhardt's avatar Jan Engelhardt (jengelh) (revision 18)
- Trim boasting from package descriptions.
- Trim descriptions in less important subpackages for length.
- Resolve rpmlint reports:
  * "libgromacs4.x86_64: E: shlib-policy-name-error SONAME:
    libgmxapi.so.0, expected package suffix: 0"
  * "libgromacs4.x86_64: E: shlib-policy-name-error SONAME:
    libgromacs.so.6, expected package suffix: 6"
Matthias Mailänder's avatar Matthias Mailänder (Mailaender) accepted request 935840 from Max Lin's avatar Max Lin (mlin7442) (revision 17)
update license. while trying to update this package to Leap 15.4, legal declined the request since license isn't corrent, see sr#934077
Klaus Kämpf's avatar Klaus Kämpf (kwk) accepted request 930679 from Christoph Junghans's avatar Christoph Junghans (cjunghans) (revision 16)
- Tag build with "openSUSE" for easier debugging by upstream
Christoph Junghans's avatar Christoph Junghans (cjunghans) accepted request 922501 from Nicolas Morey-Chaisemartin's avatar Nicolas Morey-Chaisemartin (NMoreyChaisemartin) (revision 15)
- Use openmpi macros to always build with the default openmpi version.
Klaus Kämpf's avatar Klaus Kämpf (kwk) accepted request 921188 from Christoph Junghans's avatar Christoph Junghans (cjunghans) (revision 12)
As openmpi4 is now the default, build against openmpi4.
Christoph Junghans's avatar Christoph Junghans (cjunghans) accepted request 905726 from Christoph Junghans's avatar Christoph Junghans (cjunghans) (revision 11)
- Enabled legacy api needed for votca-csg
Christian Goll's avatar Christian Goll (mslacken) accepted request 902897 from Atri Bhattacharya's avatar Atri Bhattacharya (badshah400) (revision 10)
- Update to version 2021.2.
- Turn SKIP_RPATH=OFF and SKIP_INSTALL_RPATH=ON instead; skipping rpath use entirely causes linking issues with tests, but we still want to disable rpaths for the installed libs of course.
- Rename %{name}-bash to %{name}-bash-completion in keeping with  naming convention followed by other packages.
- Add lapack-devel to BuildRequires to use system versions of blas and lapack.
- CMake 3.13 or higher is required; adapt BuildRequires accordingly.
- Disable testing for i586: doesn't work with gmock.
- Adapt to updated cmake options and drop no longer applicable ones.
buildservice-autocommit accepted request 822970 from Christoph Junghans's avatar Christoph Junghans (cjunghans) (revision 9)
baserev update by copy to link target
Christoph Junghans's avatar Christoph Junghans (cjunghans) accepted request 822950 from michel_mno's avatar michel_mno (revision 8)
- Increase default disk size from 3 to 6GB in _constraints file
buildservice-autocommit accepted request 781240 from Dirk Stoecker's avatar Dirk Stoecker (dstoecker) (revision 7)
baserev update by copy to link target
Dirk Stoecker's avatar Dirk Stoecker (dstoecker) accepted request 780373 from Christoph Junghans's avatar Christoph Junghans (cjunghans) (revision 6)
- - version bump to 2019.6 details here:
  http://manual.gromacs.org/documentation/2019.6/release-notes/2019/2019.6.html
  Hightlights:
  - Actually fix PME forces with FE without perturbed q/LJ
  - Avoid overzealous program abort with orientation restraints
  - Calculate Coulomb and LJ reciprocal terms in rerun
  - Added check for inconsistent input of distance restraint labels in gmx disre.
  - Fix compiler errors with Intel compiler
  - Avoid cryptic GPU detection errors when devices are unavailable or out of memory
buildservice-autocommit accepted request 759039 from Christoph Junghans's avatar Christoph Junghans (cjunghans) (revision 5)
baserev update by copy to link target
Christoph Junghans's avatar Christoph Junghans (cjunghans) accepted request 759038 from Christoph Junghans's avatar Christoph Junghans (cjunghans) (revision 4)
- version bump to 2019.5 details here:
  http://manual.gromacs.org/documentation/2019.5/release-notes/2019/2019.5.html
  Hightlights:
  - Fix use of uninitialized data on PME only ranks
  - Fix out of range memory access with free-energy calculations
  - Fix error with intermolecular interactions and domain decomposition
  - Fix issues with AWH with pull-geometry ‘direction’ to be periodic
  - Remove assertion failure with AWH when not using the initial stage
  - Fix dihedral angle calculation near 180 degree boundary
  - Remove problematic output of gmx angle tool
  - Check that libhwloc headers and runtime match
  - Fix .gro file formatting with large boxes
  - Fix duplicate PDB CONECT record output
buildservice-autocommit accepted request 748954 from Christoph Junghans's avatar Christoph Junghans (cjunghans) (revision 3)
baserev update by copy to link target
Christoph Junghans's avatar Christoph Junghans (cjunghans) accepted request 748940 from Christoph Junghans's avatar Christoph Junghans (cjunghans) (revision 2)
- version bump to 2019.4 details here:
  http://manual.gromacs.org/documentation/2019.4/release-notes/2019/2019.4.html
  Hightlights:
  - Fix incorrect pressure when atoms in CMAP cross a box boundary
  - Fix incorrect LJ cut-off on GPU when rvdw < rcoulomb
  - Fix (unlikely) missing bonded forces with CUDA GPUs and domain decomposition
  - Fix incorrect reporting of final kinetic energy and temperature
  - Fix segmentation fault in grompp and mdrun with cosine COM pulling
  - Fix grompp not adding angle constraints between constraints
  - Fix gmx wham with angle and dihedral geometries
  - Fix bug in gmx xpm2ps
  - Fix bug in gmx anaeig
  - Fix issue with demux.pl script
  - Fixed writing of gro files with index groups
  - Made gmx make_ndx keep chain IDs
  - Fixes that affect portability
Christoph Junghans's avatar Christoph Junghans (cjunghans) committed (revision 1)
Displaying revisions 21 - 38 of 38
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